HL_7LH5_194

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

7LH5|1|DA|A|2268, 7LH5|1|DA|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LH5_194 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0807

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

7LH5|1|DA|C|2264
7LH5|1|DA|U|2265
7LH5|1|DA|A|2266
7LH5|1|DA|A|2267
7LH5|1|DA|A|2268
7LH5|1|DA|A|2269
7LH5|1|DA|G|2270
7LH5|1|DA|G|2271
7LH5|1|DA|U|2272
7LH5|1|DA|A|2273
7LH5|1|DA|A|2274
7LH5|1|DA|C|2275
7LH5|1|DA|G|2276

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D0

50S ribosomal protein L27

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DQ

50S ribosomal protein L16