HL_7LS1_006

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUGG

Length

5 nucleotides

Bulged bases

7LS1|1|A2|U|224, 7LS1|1|A2|G|225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_006 not in the Motif Atlas

Homologous match to HL_5TBW_006

Geometric discrepancy: 0.1366

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7LS1|1|A2|C|222
7LS1|1|A2|G|223
7LS1|1|A2|U|224
7LS1|1|A2|G|225
7LS1|1|A2|G|226

Current chains

Chain A2

28S rRNA

Nearby chains

Chain F2

60S ribosomal protein L4

Chain S2

60S ribosomal protein L26