HL_7LS1_007
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUGUGAG(B9B)C
- Length
- 9 nucleotides
- Bulged bases
- 7LS1|1|A2|G|232, 7LS1|1|A2|G|236
- QA status
- Modified nucleotides: B9B
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7LS1_007 not in the Motif Atlas
- Homologous match to HL_8C3A_007
- Geometric discrepancy: 0.4473
- The information below is about HL_8C3A_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.12
- Basepair signature
- cWW-cWW-F-tWH
- Number of instances in this motif group
- 16
Unit IDs
7LS1|1|A2|G|230
7LS1|1|A2|U|231
7LS1|1|A2|G|232
7LS1|1|A2|U|233
7LS1|1|A2|G|234
7LS1|1|A2|A|235
7LS1|1|A2|G|236
7LS1|1|A2|B9B|237
7LS1|1|A2|C|238
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain F2
- 60S ribosomal protein L4
- Chain S2
- 60S ribosomal protein L26
Coloring options: