HL_7LS1_013

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCGUGAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_013 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3191

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7LS1|1|A2|G|1069
7LS1|1|A2|C|1070
7LS1|1|A2|G|1071
7LS1|1|A2|U|1072
7LS1|1|A2|G|1078
7LS1|1|A2|A|1079
7LS1|1|A2|C|1080

Current chains

Chain A2

28S rRNA

Nearby chains

Chain V2

60S ribosomal protein L29