HL_7LS1_018
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CCUCUCCAGUCCG
- Length
- 13 nucleotides
- Bulged bases
- 7LS1|1|A2|C|1252
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7LS1_018 not in the Motif Atlas
- Geometric match to HL_8C3A_039
- Geometric discrepancy: 0.3567
- The information below is about HL_8C3A_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_71121.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
7LS1|1|A2|C|1249
7LS1|1|A2|C|1250
7LS1|1|A2|U|1251
7LS1|1|A2|C|1252
7LS1|1|A2|U|1253
7LS1|1|A2|C|1254
7LS1|1|A2|C|1255
7LS1|1|A2|A|1256
7LS1|1|A2|G|1257
7LS1|1|A2|U|1258
7LS1|1|A2|C|1259
7LS1|1|A2|C|1260
7LS1|1|A2|G|1261
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain A1
- 60S ribosomal protein L7
- Chain F2
- 60S ribosomal protein L4
- Chain K2
- 60S ribosomal protein L18
- Chain V2
- 60S ribosomal protein L29
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