HL_7LS1_027

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

7LS1|1|A2|A|1693, 7LS1|1|A2|A|1694

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_027 not in the Motif Atlas

Homologous match to HL_5TBW_026

Geometric discrepancy: 0.1396

The information below is about HL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44398.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7LS1|1|A2|G|1688
7LS1|1|A2|G|1689
7LS1|1|A2|A|1690
7LS1|1|A2|U|1691
7LS1|1|A2|G|1692
7LS1|1|A2|A|1693
7LS1|1|A2|A|1694
7LS1|1|A2|C|1695

Current chains

Chain A2

28S rRNA

Nearby chains

Chain A1

60S ribosomal protein L7

Chain B2

5S ribosomal RNA; 5S rRNA

Chain Y2

60S ribosomal protein L32

Chain Z2

60S ribosomal protein L35a