HL_7LS1_034

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AG(OMC)A(OMG)UU

Length

7 nucleotides

Bulged bases

7LS1|1|A2|G|2176, 7LS1|1|A2|A|2178, 7LS1|1|A2|U|2180

QA status

Modified nucleotides: OMC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_034 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.5722

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

7LS1|1|A2|A|2175
7LS1|1|A2|G|2176
7LS1|1|A2|OMC|2177
7LS1|1|A2|A|2178
7LS1|1|A2|OMG|2179
7LS1|1|A2|U|2180
7LS1|1|A2|U|2181

Current chains

Chain A2

28S rRNA

Nearby chains

Chain J2

60S ribosomal protein L17

Chain L2

60S ribosomal protein L19