HL_7LS1_046

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

7LS1|1|A2|U|2629

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_046 not in the Motif Atlas

Homologous match to HL_8C3A_043

Geometric discrepancy: 0.1114

The information below is about HL_8C3A_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7LS1|1|A2|C|2627
7LS1|1|A2|U|2628
7LS1|1|A2|U|2629
7LS1|1|A2|C|2630
7LS1|1|A2|G|2631
7LS1|1|A2|G|2632

Current chains

Chain A2

28S rRNA

Nearby chains

Chain h2

60S ribosomal protein L41

Chain j2

60S ribosomal protein L37a

Chain m2

Small subunit ribosomal RNA; SSU rRNA