HL_7LS1_052

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAACUA(PSU)GAC

Length

11 nucleotides

Bulged bases

7LS1|1|A2|A|3416

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_052 not in the Motif Atlas

Homologous match to HL_5TBW_049

Geometric discrepancy: 0.3053

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7LS1|1|A2|G|3413
7LS1|1|A2|U|3414
7LS1|1|A2|A|3415
7LS1|1|A2|A|3416
7LS1|1|A2|C|3417
7LS1|1|A2|U|3418
7LS1|1|A2|A|3419
7LS1|1|A2|PSU|3420
7LS1|1|A2|G|3421
7LS1|1|A2|A|3422
7LS1|1|A2|C|3423

Current chains

Chain A2

28S rRNA

Nearby chains

Chain m

Elongation factor 2

Chain m2

Small subunit ribosomal RNA; SSU rRNA