HL_7LS1_057

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGCGUG

Length

6 nucleotides

Bulged bases

7LS1|1|A2|C|3793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_057 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.195

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7LS1|1|A2|C|3791
7LS1|1|A2|G|3792
7LS1|1|A2|C|3793
7LS1|1|A2|G|3794
7LS1|1|A2|U|3795
7LS1|1|A2|G|3796

Current chains

Chain A2

28S rRNA

Nearby chains