HL_7LS1_062
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UUCAG(OMU)ACG
- Length
- 9 nucleotides
- Bulged bases
- 7LS1|1|A2|A|3956
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7LS1_062 not in the Motif Atlas
- Homologous match to HL_8C3A_059
- Geometric discrepancy: 0.1887
- The information below is about HL_8C3A_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_34636.1
- Basepair signature
- cWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
7LS1|1|A2|U|3953
7LS1|1|A2|U|3954
7LS1|1|A2|C|3955
7LS1|1|A2|A|3956
7LS1|1|A2|G|3957
7LS1|1|A2|OMU|3958
7LS1|1|A2|A|3959
7LS1|1|A2|C|3960
7LS1|1|A2|G|3961
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain K2
- 60S ribosomal protein L18
- Chain N2
- 60S ribosomal protein L21
- Chain U2
- 60S ribosomal protein L27a
- Chain V2
- 60S ribosomal protein L29
- Chain i2
- 60S ribosomal protein L36a
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