HL_7LS1_087

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

7LS1|1|m2|C|383

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_087 not in the Motif Atlas

Geometric match to HL_6UFM_001

Geometric discrepancy: 0.2474

The information below is about HL_6UFM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_04642.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7LS1|1|m2|G|379
7LS1|1|m2|U|380
7LS1|1|m2|C|381
7LS1|1|m2|G|382
7LS1|1|m2|C|383
7LS1|1|m2|C|384
7LS1|1|m2|G|385
7LS1|1|m2|U|386
7LS1|1|m2|G|387
7LS1|1|m2|C|388
7LS1|1|m2|C|389

Current chains

Chain m2

28S rRNA

Nearby chains

Chain u

40S ribosomal protein S8

Chain w2

40S ribosomal protein S11