HL_7LS1_088
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UCAGGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7LS1_088 not in the Motif Atlas
- Homologous match to HL_4V88_194
- Geometric discrepancy: 0.1086
- The information below is about HL_4V88_194
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50142.3
- Basepair signature
- cWW-cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
7LS1|1|m2|U|418
7LS1|1|m2|C|419
7LS1|1|m2|A|420
7LS1|1|m2|G|421
7LS1|1|m2|G|422
7LS1|1|m2|G|423
Current chains
- Chain m2
- 28S rRNA
Nearby chains
- Chain J3
- 40S ribosomal protein S2
- Chain L3
- 40S ribosomal protein S9
- Chain P3
- 40S ribosomal protein S15a
- Chain w2
- 40S ribosomal protein S11
Coloring options: