HL_7LS1_099

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_099 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.2175

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7LS1|1|m2|A|959
7LS1|1|m2|G|960
7LS1|1|m2|G|961
7LS1|1|m2|U|962
7LS1|1|m2|G|963
7LS1|1|m2|A|964
7LS1|1|m2|A|965
7LS1|1|m2|A|966
7LS1|1|m2|U|967
7LS1|1|m2|U|968

Current chains

Chain m2

28S rRNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain O3

40S ribosomal protein S14

Chain n2

Transfer RNA; tRNA