HL_7LS1_103

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_103 not in the Motif Atlas

Geometric match to HL_5TBW_044

Geometric discrepancy: 0.2905

The information below is about HL_5TBW_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.1

Basepair signature

cWW

Number of instances in this motif group

4

Unit IDs

7LS1|1|m2|G|1144
7LS1|1|m2|A|1145
7LS1|1|m2|A|1146
7LS1|1|m2|A|1147
7LS1|1|m2|C|1148

Current chains

Chain m2

28S rRNA

Nearby chains

Chain F3

40S ribosomal protein S26

Chain J3

40S ribosomal protein S2