HL_7LS1_105
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GAC(B8N)CAACAC
- Length
- 10 nucleotides
- Bulged bases
- 7LS1|1|m2|A|1255
- QA status
- Modified nucleotides: B8N
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7LS1_105 not in the Motif Atlas
- Homologous match to HL_8P9A_215
- Geometric discrepancy: 0.1339
- The information below is about HL_8P9A_215
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97521.2
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
7LS1|1|m2|G|1247
7LS1|1|m2|A|1248
7LS1|1|m2|C|1249
7LS1|1|m2|B8N|1250
7LS1|1|m2|C|1251
7LS1|1|m2|A|1252
7LS1|1|m2|A|1253
7LS1|1|m2|C|1254
7LS1|1|m2|A|1255
7LS1|1|m2|C|1256
Current chains
- Chain m2
- 28S rRNA
Nearby chains
- Chain A
- Isoform 3 of Plasminogen activator inhibitor 1 RNA-binding protein
- Chain C3
- 40S ribosomal protein S20
- Chain H3
- 40S ribosomal protein S29
- Chain n2
- Transfer RNA; tRNA
- Chain x2
- 40S ribosomal protein S15
- Chain y2
- 40S ribosomal protein S16
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