HL_7LS1_109

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_109 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.27

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7LS1|1|m2|C|1419
7LS1|1|m2|C|1420
7LS1|1|m2|C|1421
7LS1|1|m2|G|1422
7LS1|1|m2|A|1423
7LS1|1|m2|G|1424

Current chains

Chain m2

28S rRNA

Nearby chains

Chain B3

40S ribosomal protein S19

Chain y2

40S ribosomal protein S16