HL_7LS1_112
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AUUGCAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 7LS1|1|m2|U|1623, 7LS1|1|m2|U|1624, 7LS1|1|m2|A|1625
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7LS1_112 not in the Motif Atlas
- Homologous match to HL_4V88_219
- Geometric discrepancy: 0.2441
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
7LS1|1|m2|A|1616
7LS1|1|m2|U|1617
7LS1|1|m2|U|1618
7LS1|1|m2|G|1619
7LS1|1|m2|C|1620
7LS1|1|m2|A|1621
7LS1|1|m2|A|1622
7LS1|1|m2|U|1623
7LS1|1|m2|U|1624
7LS1|1|m2|A|1625
7LS1|1|m2|U|1626
7LS1|1|m2|U|1627
Current chains
- Chain m2
- 28S rRNA
Nearby chains
- Chain A3
- 40S ribosomal protein S18
- Chain B3
- 40S ribosomal protein S19
- Chain H3
- 40S ribosomal protein S29
- Chain x2
- 40S ribosomal protein S15
Coloring options: