HL_7LS1_114

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_114 not in the Motif Atlas

Homologous match to HL_4V88_222

Geometric discrepancy: 0.2566

The information below is about HL_4V88_222

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7LS1|1|m2|G|1849
7LS1|1|m2|U|1850
7LS1|1|m2|G|1851
7LS1|1|m2|A|1852
7LS1|1|m2|A|1853
7LS1|1|m2|C|1854

Current chains

Chain m2

28S rRNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain h2

60S ribosomal protein L41