HL_7LS1_116
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GCCCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7LS1_116 not in the Motif Atlas
- Homologous match to HL_4V8N_144
- Geometric discrepancy: 0.2865
- The information below is about HL_4V8N_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7LS1|1|n2|G|31
7LS1|1|n2|C|32
7LS1|1|n2|C|33
7LS1|1|n2|C|34
7LS1|1|n2|A|35
7LS1|1|n2|U|36
7LS1|1|n2|A|37
7LS1|1|n2|A|38
7LS1|1|n2|C|39
Current chains
- Chain n2
- tRNA
Nearby chains
- Chain A
- Isoform 3 of Plasminogen activator inhibitor 1 RNA-binding protein
- Chain O3
- 40S ribosomal protein S14
- Chain m2
- Small subunit ribosomal RNA; SSU rRNA
- Chain x2
- 40S ribosomal protein S15
- Chain y2
- 40S ribosomal protein S16
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