HL_7LS1_120

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCUUGAAAC(A2M)

Length

10 nucleotides

Bulged bases

7LS1|1|A2|C|1139

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_120 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.2495

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7LS1|1|A2|U|1131
7LS1|1|A2|C|1132
7LS1|1|A2|U|1133
7LS1|1|A2|U|1134
7LS1|1|A2|G|1135
7LS1|1|A2|A|1136
7LS1|1|A2|A|1137
7LS1|1|A2|A|1138
7LS1|1|A2|C|1139
7LS1|1|A2|A2M|1140

Current chains

Chain A2

28S rRNA

Nearby chains

Chain E2

60S ribosomal protein L3

Chain U2

60S ribosomal protein L27a

Chain Y2

60S ribosomal protein L32