HL_7LS1_125

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AAGCAGAAUU

Length

10 nucleotides

Bulged bases

7LS1|1|A2|G|4127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_125 not in the Motif Atlas

Geometric match to HL_3W3S_002

Geometric discrepancy: 0.3395

The information below is about HL_3W3S_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

44

Unit IDs

7LS1|1|A2|A|4125
7LS1|1|A2|A|4126
7LS1|1|A2|G|4127
7LS1|1|A2|C|4128
7LS1|1|A2|A|4129
7LS1|1|A2|G|4130
7LS1|1|A2|A|4131
7LS1|1|A2|A|4132
7LS1|1|A2|U|4133
7LS1|1|A2|U|4134

Current chains

Chain A2

28S rRNA

Nearby chains

Chain C1

60S ribosomal protein L9

Chain g2

Ubiquitin-60S ribosomal protein L40

Chain m

Elongation factor 2