HL_7LS2_005

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

7LS2|1|A2|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS2_005 not in the Motif Atlas

Homologous match to HL_5TBW_005

Geometric discrepancy: 0.2827

The information below is about HL_5TBW_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7LS2|1|A2|U|204
7LS2|1|A2|C|205
7LS2|1|A2|U|206
7LS2|1|A2|G|207
7LS2|1|A2|A|208
7LS2|1|A2|U|209
7LS2|1|A2|C|210
7LS2|1|A2|G|211

Current chains

Chain A2

28S rRNA

Nearby chains

Chain S2

60S ribosomal protein L26

Chain Y2

60S ribosomal protein L32