7LS2 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7LS2_001 | 1/A2/37:44 | No text annotation | homologous HL_8C3A_001 NA | |
| HL_7LS2_002 | 1/A2/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_7LS2_003 | 1/A2/89:95 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_7LS2_004 | 1/A2/131:137 | No text annotation | geometric HL_4WF9_003 HL_75660.10 | |
| HL_7LS2_005 | 1/A2/204:211 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_005 NA | |
| HL_7LS2_006 | 1/A2/222:226 | No text annotation | homologous HL_8C3A_006 NA | |
| HL_7LS2_007 | 1/A2/230:238 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_7LS2_008 | 1/A2/289:298 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_7LS2_009 | 1/A2/314:323 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_7LS2_120 | 1/A2/368:373 | GNRA | homologous HL_8C3A_010 NA | |
| HL_7LS2_121 | 1/A2/393:398 | GNRA | homologous HL_8C3A_011 NA | |
| HL_7LS2_013 | 1/A2/1004:1021 | No text annotation | ||
| HL_7LS2_122 | 1/A2/1131:1140 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_7LS2_016 | 1/A2/1177:1188 | No text annotation | geometric HL_2ZNI_001 HL_75660.10 | |
| HL_7LS2_017 | 1/A2/1203:1208 | GNRA | homologous HL_8C3A_016 NA | |
| HL_7LS2_018 | 1/A2/1219:1225 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_7LS2_019 | 1/A2/1249:1261 | No text annotation | geometric HL_4PJO_001 NA | |
| HL_7LS2_020 | 1/A2/1293:1297 | Mini UNCG | geometric HL_1ZBH_001 HL_12626.2 | |
| HL_7LS2_021 | 1/A2/1374:1379 | GNRA | homologous HL_5TBW_019 NA | |
| HL_7LS2_022 | 1/A2/1406:1415 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_7LS2_023 | 1/A2/1440:1448 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_7LS2_024 | 1/A2/1488:1493 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_7LS2_026 | 1/A2/1618:1625 | No text annotation | geometric HL_1KH6_003 HL_33487.2 | |
| HL_7LS2_027 | 1/A2/1666:1672 | GNRA | homologous HL_8C3A_025 NA | |
| HL_7LS2_028 | 1/A2/1688:1695 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_7LS2_029 | 1/A2/1780:1790 | No text annotation | ||
| HL_7LS2_030 | 1/A2/1808:1815 | GNRA with tandem sheared | homologous HL_8C3A_028 NA | |
| HL_7LS2_032 | 1/A2/2012:2016 | Mini UNCG | geometric HL_4L8H_001 HL_01957.1 | |
| HL_7LS2_033 | 1/A2/2072:2077 | GNRA | homologous HL_8C3A_030 NA | |
| HL_7LS2_034 | 1/A2/2131:2139 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_7LS2_035 | 1/A2/2175:2181 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_7LS2_036 | 1/A2/2213:2218 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_7LS2_038 | 1/A2/2278:2287 | No text annotation | geometric HL_5J7L_168 NA | |
| HL_7LS2_040 | 1/A2/2333:2338 | GNRA | homologous HL_5TBW_036 NA | |
| HL_7LS2_041 | 1/A2/2379:2387 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_7LS2_042 | 1/A2/2419:2425 | No text annotation | homologous HL_8C3A_038 NA | |
| HL_7LS2_044 | 1/A2/2493:2497 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_7LS2_045 | 1/A2/2547:2554 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_7LS2_046 | 1/A2/2565:2571 | GNRA | homologous HL_5TBW_042 NA | |
| HL_7LS2_047 | 1/A2/2627:2632 | UNCG | homologous HL_8C3A_043 NA | |
| HL_7LS2_048 | 1/A2/3270:3274 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_7LS2_049 | 1/A2/3295:3305 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_7LS2_050 | 1/A2/3324:3330 | GNRA variation | geometric HL_4QK9_001 HL_34789.6 | |
| HL_7LS2_123 | 1/A2/3380:3385 | GNRA | homologous HL_8P9A_159 NA | |
| HL_7LS2_052 | 1/A2/3413:3423 | No text annotation | homologous HL_5TBW_049 NA | |
| HL_7LS2_053 | 1/A2/3452:3460 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_7LS2_054 | 1/A2/3529:3538 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_7LS2_058 | 1/A2/3845:3853 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_7LS2_127 | 1/A2/3862:3874 | No text annotation | homologous HL_8P9A_166 NA | |
| HL_7LS2_060 | 1/A2/3902:3910 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_7LS2_061 | 1/A2/3922:3929 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_7LS2_062 | 1/A2/3953:3961 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_7LS2_063 | 1/A2/3973:3978 | GNRA | homologous HL_8C3A_060 NA | |
| HL_7LS2_064 | 1/A2/4004:4014 | tRNA anticodon loop | geometric HL_8H1B_001 HL_56046.1 | |
| HL_7LS2_065 | 1/A2/4069:4077 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_7LS2_066 | 1/A2/4126:4133 | No text annotation | homologous HL_8C3A_063 NA | |
| HL_7LS2_067 | 1/A2/4147:4157 | No text annotation | ||
| HL_7LS2_068 | 1/A2/4192:4197 | GNRA | homologous HL_8C3A_065 NA | |
| HL_7LS2_069 | 1/A2/4255:4260 | GNRA | homologous HL_8C3A_066 NA | |
| HL_7LS2_070 | 1/A2/4298:4303 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_7LS2_071 | 1/A2/4340:4354 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_7LS2_073 | 1/A2/4551:4560 | No text annotation | ||
| HL_7LS2_074 | 1/A2/4621:4629 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_7LS2_075 | 1/A2/4667:4674 | No text annotation | geometric HL_5WTI_001 HL_34080.1 | |
| HL_7LS2_125 | 1/B2/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_7LS2_076 | 1/B2/36:41 | No text annotation | homologous HL_5J7L_203 NA | |
| HL_7LS2_077 | 1/B2/86:91 | GNRA | homologous HL_5TBW_186 NA | |
| HL_7LS2_078 | 1/C2/47:56 | Pseudoknot with intercalation | geometric HL_4V9F_001 HL_17803.3 | |
| HL_7LS2_079 | 1/C2/68:90 | No text annotation | homologous HL_8C3A_075 NA | |
| HL_7LS2_080 | 1/C2/107:112 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_7LS2_081 | 1/C2/122:128 | No text annotation | ||
| HL_7LS2_082 | 1/m2/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_7LS2_084 | 1/m2/156:162 | GNRA related | homologous HL_4V88_188 NA | |
| HL_7LS2_086 | 1/m2/290:297 | T-loop with 1 bulged base | geometric HL_4V88_191 NA | |
| HL_7LS2_088 | 1/m2/379:389 | tRNA D-loop | geometric HL_6UFM_001 HL_04642.4 | |
| HL_7LS2_089 | 1/m2/418:423 | No text annotation | homologous HL_4V88_194 NA | |
| HL_7LS2_090 | 1/m2/443:454 | No text annotation | homologous HL_4V88_195 NA | |
| HL_7LS2_091 | 1/m2/464:469 | UNCG | homologous HL_4V88_196 NA | |
| HL_7LS2_092 | 1/m2/500:506 | No text annotation | homologous HL_4V88_197 NA | |
| HL_7LS2_094 | 1/m2/571:583 | No text annotation | geometric HL_4V88_199 NA | |
| HL_7LS2_095 | 1/m2/620:625 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_7LS2_097 | 1/m2/822:830 | No text annotation | homologous HL_4V88_203 NA | |
| HL_7LS2_098 | 1/m2/835:843 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_7LS2_100 | 1/m2/959:968 | No text annotation | homologous HL_4V88_206 NA | |
| HL_7LS2_101 | 1/m2/996:1001 | GNRA | homologous HL_4V88_207 NA | |
| HL_7LS2_102 | 1/m2/1056:1066 | No text annotation | homologous HL_4V88_208 NA | |
| HL_7LS2_103 | 1/m2/1116:1121 | Pseudoknot geometry | geometric HL_1U6B_002 HL_12125.4 | |
| HL_7LS2_104 | 1/m2/1143:1149 | No text annotation | geometric HL_8C3A_039 NA | |
| HL_7LS2_105 | 1/m2/1180:1185 | GNRA | homologous HL_4V88_211 NA | |
| HL_7LS2_106 | 1/m2/1247:1256 | No text annotation | homologous HL_8C3A_217 NA | |
| HL_7LS2_108 | 1/m2/1355:1360 | GNRA | homologous HL_4V88_214 NA | |
| HL_7LS2_109 | 1/m2/1368:1375 | No text annotation | homologous HL_4V88_215 NA | |
| HL_7LS2_110 | 1/m2/1419:1424 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_7LS2_111 | 1/m2/1462:1468 | UNCG variation | geometric HL_1P6V_001 NA | |
| HL_7LS2_128 | 1/m2/1616:1627 | No text annotation | homologous HL_8CRE_223 HL_50951.3 | |
| HL_7LS2_114 | 1/m2/1660:1668 | No text annotation | homologous HL_4V88_220 NA | |
| HL_7LS2_116 | 1/m2/1849:1854 | GNRA variation | homologous HL_4V88_222 NA | |
| HL_7LS2_118 | 1/n2/31:39 | No text annotation | homologous HL_6PMO_004 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7LS2_010 | GNRA with extra cWW | ||
| HL_7LS2_011 | No text annotation | ||
| HL_7LS2_012 | No text annotation | ||
| HL_7LS2_014 | No text annotation | ||
| HL_7LS2_015 | No text annotation | ||
| HL_7LS2_025 | No text annotation | ||
| HL_7LS2_031 | No text annotation | ||
| HL_7LS2_037 | Mini UNCG | ||
| HL_7LS2_039 | No text annotation | ||
| HL_7LS2_043 | Mini UNCG | ||
| HL_7LS2_051 | No text annotation | ||
| HL_7LS2_055 | No text annotation | ||
| HL_7LS2_056 | No text annotation | ||
| HL_7LS2_057 | No text annotation | ||
| HL_7LS2_059 | No text annotation | ||
| HL_7LS2_124 | tRNA anticodon loop | ||
| HL_7LS2_072 | Externally structured | ||
| HL_7LS2_126 | No text annotation | ||
| HL_7LS2_083 | No text annotation | ||
| HL_7LS2_085 | No text annotation | ||
| HL_7LS2_087 | No text annotation | ||
| HL_7LS2_093 | No text annotation | ||
| HL_7LS2_096 | No text annotation | ||
| HL_7LS2_099 | No text annotation | ||
| HL_7LS2_107 | Anticodon loop related | ||
| HL_7LS2_112 | GNRA | ||
| HL_7LS2_113 | No text annotation | ||
| HL_7LS2_115 | Externally structured | ||
| HL_7LS2_117 | No text annotation | ||
| HL_7LS2_119 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7LS2_001 | 1/A2/6:7, 1/C2/149:151 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_7LS2_002 | 1/A2/12:14, 1/C2/143:144 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_7LS2_003 | 1/A2/16:18, 1/C2/139:141 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_01003.6 | |
| IL_7LS2_004 | 1/A2/26:27, 1/A2/55:57 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_7LS2_005 | 1/A2/30:37, 1/A2/44:52 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_93502.3 | |
| IL_7LS2_006 | 1/A2/81:88, 1/A2/96:102 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_7LS2_007 | 1/A2/118:122, 1/A2/147:153 | No text annotation | ||
| IL_7LS2_008 | 1/A2/125:126, 1/A2/142:144 | Single bulged U | geometric IL_7KVT_002 IL_97561.7 | |
| IL_7LS2_009 | 1/A2/168:173, 1/A2/263:267 | No text annotation | ||
| IL_7LS2_013 | 1/A2/182:189, 1/A2/252:255 | No text annotation | ||
| IL_7LS2_014 | 1/A2/195:196, 1/A2/244:246 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_7LS2_015 | 1/A2/199:201, 1/A2/214:215 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_7LS2_016 | 1/A2/339:342, 1/C2/32:33 | Minor groove platform | geometric IL_7RQB_073 NA | |
| IL_7LS2_017 | 1/A2/348:350, 1/C2/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_7LS2_018 | 1/A2/387:390, 1/A2/401:414 | No text annotation | homologous IL_5TBW_014 NA | |
| IL_7LS2_019 | 1/A2/415:421, 1/C2/13:19 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
| IL_7LS2_020 | 1/A2/443:446, 1/A2/1114:1118 | No text annotation | geometric IL_6AZ4_001 NA | |
| IL_7LS2_021 | 1/A2/448:450, 1/A2/1111:1112 | Single bulged C | geometric IL_1S03_006 IL_05642.5 | |
| IL_7LS2_022 | 1/A2/459:460, 1/A2/702:704 | Single bulged U | geometric IL_7RQB_080 NA | |
| IL_7LS2_023 | 1/A2/462:465, 1/A2/698:700 | No text annotation | geometric IL_4V87_185 NA | |
| IL_7LS2_024 | 1/A2/465:472, 1/A2/689:698 | No text annotation | ||
| IL_7LS2_026 | 1/A2/488:491, 1/A2/670:676 | No text annotation | ||
| IL_7LS2_029 | 1/A2/500:506, 1/A2/661:663 | Stack and bulge | geometric IL_2O3X_001 IL_53541.1 | |
| IL_7LS2_030 | 1/A2/509:511, 1/A2/657:658 | Single bulged A | geometric IL_6WPI_001 IL_14190.4 | |
| IL_7LS2_032 | 1/A2/716:717, 1/A2/1100:1102 | Single bulged G | geometric IL_4LFB_036 IL_28408.4 | |
| IL_7LS2_033 | 1/A2/730:731, 1/A2/840:843 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_7LS2_034 | 1/A2/731:733, 1/A2/839:840 | Single stack bend | geometric IL_5J7L_249 NA | |
| IL_7LS2_035 | 1/A2/733:735, 1/A2/837:839 | No text annotation | ||
| IL_7LS2_036 | 1/A2/735:738, 1/A2/836:837 | No text annotation | ||
| IL_7LS2_037 | 1/A2/739:741, 1/A2/827:835 | No text annotation | ||
| IL_7LS2_287 | 1/A2/752:759, 1/A2/810:819 | No text annotation | ||
| IL_7LS2_048 | 1/A2/941:942, 1/A2/1042:1044 | Single bulged C | geometric IL_1S03_006 IL_05642.5 | |
| IL_7LS2_051 | 1/A2/1171:1174, 1/A2/1193:1196 | No text annotation | ||
| IL_7LS2_290 | 1/A2/1171:1175, 1/A2/1190:1196 | No text annotation | ||
| IL_7LS2_052 | 1/A2/1174:1175, 1/A2/1190:1193 | Major groove intercalation | geometric IL_1U9S_003 IL_71421.5 | |
| IL_7LS2_053 | 1/A2/1238:1242, 1/A2/1268:1273 | Triple sheared related | geometric IL_4V9F_018 IL_51313.1 | |
| IL_7LS2_054 | 1/A2/1244:1247, 1/A2/1263:1266 | Double sheared | geometric IL_4LFB_060 IL_58355.4 | |
| IL_7LS2_055 | 1/A2/1280:1281, 1/A2/1309:1311 | Single bulged A | homologous IL_5TBW_024 NA | |
| IL_7LS2_056 | 1/A2/1287:1289, 1/A2/1302:1303 | Single stack bend | geometric IL_4LFB_041 IL_15011.5 | |
| IL_7LS2_057 | 1/A2/1292:1293, 1/A2/1297:1299 | Single bulged C | geometric IL_5J7L_311 NA | |
| IL_7LS2_291 | 1/A2/1333:1335, 1/A2/1468:1470 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_7LS2_292 | 1/A2/1335:1339, 1/A2/1461:1468 | No text annotation | homologous IL_8C3A_030 NA | |
| IL_7LS2_059 | 1/A2/1358:1359, 1/A2/1425:1427 | Single bulged A | homologous IL_8C3A_031 NA | |
| IL_7LS2_060 | 1/A2/1363:1364, 1/A2/1389:1391 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_7LS2_061 | 1/A2/1364:1368, 1/A2/1385:1389 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_7LS2_293 | 1/A2/1399:1402, 1/A2/1418:1420 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_7LS2_063 | 1/A2/1403:1405, 1/A2/1416:1417 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_7LS2_064 | 1/A2/1437:1439, 1/A2/1449:1453 | Multiple bulged bases | geometric IL_5TBW_033 NA | |
| IL_7LS2_065 | 1/A2/1484:1486, 1/A2/1495:1497 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_7LS2_066 | 1/A2/1499:1501, 1/A2/1650:1653 | No text annotation | ||
| IL_7LS2_068 | 1/A2/1525:1527, 1/A2/1640:1641 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_7LS2_295 | 1/A2/1534:1546, 1/A2/1588:1599 | No text annotation | ||
| IL_7LS2_296 | 1/A2/1548:1551, 1/A2/1583:1586 | No text annotation | homologous IL_8C3A_481 NA | |
| IL_7LS2_070 | 1/A2/1551:1553, 1/A2/1581:1583 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_7LS2_074 | 1/A2/1616:1618, 1/A2/1625:1626 | Single bulged G | homologous IL_8C3A_048 NA | |
| IL_7LS2_075 | 1/A2/1660:1662, 1/A2/1676:1678 | Isolated non-canonical cWW pair | homologous IL_8C3A_049 NA | |
| IL_7LS2_299 | 1/A2/1707:1711, 1/A2/1869:1873 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_7LS2_078 | 1/A2/1713:1720, 1/A2/1866:1867 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
| IL_7LS2_079 | 1/A2/1720:1722, 1/A2/1865:1866 | No text annotation | ||
| IL_7LS2_080 | 1/A2/1722:1724, 1/A2/1864:1865 | No text annotation | ||
| IL_7LS2_081 | 1/A2/1728:1735, 1/A2/1855:1860 | No text annotation | homologous IL_8C3A_054 NA | |
| IL_7LS2_082 | 1/A2/1735:1746, 1/A2/1840:1855 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_7LS2_083 | 1/A2/1748:1750, 1/A2/1837:1838 | Single bulged U | homologous IL_5TBW_053 NA | |
| IL_7LS2_084 | 1/A2/1759:1767, 1/A2/1824:1828 | Kink-turn | homologous IL_8C3A_057 NA | |
| IL_7LS2_085 | 1/A2/1775:1779, 1/A2/1791:1795 | No text annotation | ||
| IL_7LS2_086 | 1/A2/1805:1807, 1/A2/1816:1818 | Isolated non-canonical cWW pair | geometric IL_4P3U_012 IL_01003.6 | |
| IL_7LS2_087 | 1/A2/1885:1887, 1/A2/2027:2028 | Single bulged C | geometric IL_3DIL_001 IL_05642.5 | |
| IL_7LS2_089 | 1/A2/2045:2047, 1/A2/2097:2100 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_7LS2_091 | 1/A2/2054:2056, 1/A2/2089:2090 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_7LS2_092 | 1/A2/2057:2064, 1/A2/2084:2088 | Kink-turn | homologous IL_5TBW_059 NA | |
| IL_7LS2_093 | 1/A2/2067:2069, 1/A2/2080:2081 | Single bulged A | geometric IL_7RQB_033 NA | |
| IL_7LS2_300 | 1/A2/2113:2119, 1/A2/3514:3519 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_7LS2_336 | 1/A2/2170:2174, 1/A2/2182:2184 | C-loop | homologous IL_8P9A_290 NA | |
| IL_7LS2_095 | 1/A2/2201:2205, 1/A2/2264:2269 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_7LS2_098 | 1/A2/2297:2302, 1/A2/2527:2529 | Isolated non-canonical cWW pair | geometric IL_4RUM_001 IL_76400.2 | |
| IL_7LS2_099 | 1/A2/2304:2305, 1/A2/2523:2525 | Single bulged U | geometric IL_2R8S_004 IL_97561.7 | |
| IL_7LS2_100 | 1/A2/2344:2348, 1/A2/2507:2511 | Triple sheared | homologous IL_5TBW_067 NA | |
| IL_7LS2_101 | 1/A2/2368:2369, 1/A2/2479:2481 | Single bulged C | homologous IL_8C3A_075 NA | |
| IL_7LS2_102 | 1/A2/2369:2371, 1/A2/2477:2479 | No text annotation | ||
| IL_7LS2_104 | 1/A2/2401:2403, 1/A2/2440:2443 | Isolated tHS basepair with bulges | geometric IL_4V9F_076 IL_87316.4 | |
| IL_7LS2_105 | 1/A2/2406:2408, 1/A2/2436:2437 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_7LS2_106 | 1/A2/2410:2417, 1/A2/2427:2434 | No text annotation | ||
| IL_7LS2_107 | 1/A2/2459:2460, 1/A2/2465:2467 | No text annotation | ||
| IL_7LS2_108 | 1/A2/2587:2593, 1/A2/3506:3509 | No text annotation | homologous IL_5TBW_074 NA | |
| IL_7LS2_109 | 1/A2/2599:2601, 1/A2/3498:3500 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_7LS2_110 | 1/A2/2602:2605, 1/A2/3496:3497 | Major groove platform; stack outside cWW | homologous IL_8C3A_082 NA | |
| IL_7LS2_302 | 1/A2/2602:2610, 1/A2/3493:3497 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_7LS2_111 | 1/A2/2605:2610, 1/A2/3493:3496 | Intercalated tWH | geometric IL_5TBW_077 NA | |
| IL_7LS2_112 | 1/A2/2622:2627, 1/A2/2632:2638 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_20700.3 | |
| IL_7LS2_113 | 1/A2/2644:2646, 1/A2/3266:3268 | Isolated non-canonical cWW pair | homologous IL_5TBW_079 NA | |
| IL_7LS2_114 | 1/A2/2651:2652, 1/A2/3258:3261 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_7LS2_116 | 1/A2/2657:2660, 1/A2/3245:3254 | No text annotation | ||
| IL_7LS2_117 | 1/A2/3288:3289, 1/A2/3483:3485 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_7LS2_118 | 1/A2/3316:3321, 1/A2/3333:3340 | No text annotation | homologous IL_8C3A_088 NA | |
| IL_7LS2_119 | 1/A2/3356:3359, 1/A2/3405:3406 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_7LS2_120 | 1/A2/3360:3364, 1/A2/3399:3404 | No text annotation | ||
| IL_7LS2_121 | 1/A2/3364:3370, 1/A2/3395:3399 | No text annotation | ||
| IL_7LS2_304 | 1/A2/3371:3377, 1/A2/3388:3394 | No text annotation | homologous IL_8P9A_316 NA | |
| IL_7LS2_123 | 1/A2/3436:3437, 1/A2/3467:3470 | Bulged stacked bases | geometric IL_5TBW_089 NA | |
| IL_7LS2_124 | 1/A2/3437:3449, 1/A2/3463:3467 | No text annotation | ||
| IL_7LS2_125 | 1/A2/3551:3554, 1/A2/4215:4217 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_7LS2_126 | 1/A2/3556:3558, 1/A2/4210:4213 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_7LS2_127 | 1/A2/3569:3571, 1/A2/4040:4041 | Single bulged U | homologous IL_5TBW_093 NA | |
| IL_7LS2_128 | 1/A2/3572:3573, 1/A2/4036:4039 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_7LS2_130 | 1/A2/3583:3587, 1/A2/3831:3836 | No text annotation | ||
| IL_7LS2_135 | 1/A2/3732:3738, 1/A2/3813:3816 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_7LS2_136 | 1/A2/3739:3741, 1/A2/3811:3812 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_7LS2_137 | 1/A2/3745:3747, 1/A2/3762:3764 | Isolated non-canonical cWW pair | geometric IL_5MWI_004 IL_01003.6 | |
| IL_7LS2_140 | 1/A2/3843:3844, 1/A2/3854:3856 | Single bulged A | homologous IL_8C3A_107 NA | |
| IL_7LS2_141 | 1/A2/3895:3897, 1/A2/3915:3919 | Isolated tHS basepair with bulges | homologous IL_5TBW_099 NA | |
| IL_7LS2_309 | 1/A2/3943:3945, 1/A2/3969:3970 | No text annotation | ||
| IL_7LS2_143 | 1/A2/3947:3950, 1/A2/3964:3967 | Tandem non-canonical cWW pairs | homologous IL_5TBW_100 NA | |
| IL_7LS2_338 | 1/A2/3999:4002, 1/A2/4016:4017 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_7LS2_145 | 1/A2/4052:4057, 1/A2/4091:4096 | No text annotation | ||
| IL_7LS2_310 | 1/A2/4057:4059, 1/A2/4087:4091 | Major groove minor groove platform with extra cWW | homologous IL_8C3A_113 NA | |
| IL_7LS2_147 | 1/A2/4064:4068, 1/A2/4078:4082 | Triple sheared | homologous IL_5TBW_106 NA | |
| IL_7LS2_148 | 1/A2/4105:4106, 1/A2/4178:4180 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_7LS2_149 | 1/A2/4108:4110, 1/A2/4172:4176 | Isolated non-canonical cWW with bulges | geometric IL_5TBW_108 NA | |
| IL_7LS2_150 | 1/A2/4110:4111, 1/A2/4169:4172 | No text annotation | homologous IL_8C3A_117 NA | |
| IL_7LS2_151 | 1/A2/4118:4120, 1/A2/4141:4143 | Isolated non-canonical cWW pair | geometric IL_5TBW_110 NA | |
| IL_7LS2_311 | 1/A2/4118:4124, 1/A2/4135:4143 | No text annotation | ||
| IL_7LS2_152 | 1/A2/4120:4122, 1/A2/4137:4141 | No text annotation | ||
| IL_7LS2_312 | 1/A2/4120:4124, 1/A2/4135:4141 | No text annotation | ||
| IL_7LS2_155 | 1/A2/4189:4190, 1/A2/4199:4201 | Single bulged A | homologous IL_8C3A_122 NA | |
| IL_7LS2_156 | 1/A2/4232:4237, 1/A2/4369:4375 | No text annotation | ||
| IL_7LS2_313 | 1/A2/4242:4244, 1/A2/4270:4272 | Isolated non-canonical cWW pair | homologous IL_8P9A_343 NA | |
| IL_7LS2_157 | 1/A2/4248:4255, 1/A2/4260:4266 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_7LS2_159 | 1/A2/4276:4281, 1/A2/4321:4325 | No text annotation | ||
| IL_7LS2_314 | 1/A2/4284:4289, 1/A2/4314:4318 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_7LS2_161 | 1/A2/4290:4292, 1/A2/4311:4313 | Isolated non-canonical cWW pair | geometric IL_6OL3_002 IL_01003.6 | |
| IL_7LS2_162 | 1/A2/4293:4294, 1/A2/4307:4310 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_7LS2_163 | 1/A2/4332:4337, 1/A2/4357:4362 | UAA/GAN with extra cWW | geometric IL_5J7L_350 NA | |
| IL_7LS2_165 | 1/A2/4395:4399, 1/A2/4599:4603 | Partly complementary | geometric IL_8D29_010 IL_71154.5 | |
| IL_7LS2_166 | 1/A2/4399:4401, 1/A2/4597:4599 | Isolated non-canonical cWW pair | geometric IL_5AOX_001 IL_01003.6 | |
| IL_7LS2_167 | 1/A2/4401:4403, 1/A2/4594:4597 | No text annotation | ||
| IL_7LS2_168 | 1/A2/4408:4417, 1/A2/4514:4522 | No text annotation | ||
| IL_7LS2_174 | 1/A2/4530:4533, 1/A2/4576:4579 | Tandem non-canonical cWW pairs | geometric IL_3R2D_002 IL_71194.4 | |
| IL_7LS2_339 | 1/A2/4536:4542, 1/A2/4568:4573 | No text annotation | ||
| IL_7LS2_177 | 1/A2/4618:4621, 1/A2/4629:4632 | Tandem non-canonical cWW pairs | homologous IL_8C3A_135 NA | |
| IL_7LS2_178 | 1/A2/4638:4640, 1/A2/4703:4705 | Isolated non-canonical cWW pair | geometric IL_3D0U_006 IL_01003.6 | |
| IL_7LS2_179 | 1/A2/4642:4643, 1/A2/4699:4701 | Single bulged C | geometric IL_1KUQ_002 IL_05642.5 | |
| IL_7LS2_180 | 1/A2/4646:4648, 1/A2/4691:4696 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_7LS2_181 | 1/A2/4649:4655, 1/A2/4685:4690 | No text annotation | ||
| IL_7LS2_182 | 1/A2/4658:4663, 1/A2/4678:4682 | No text annotation | ||
| IL_7LS2_183 | 1/B2/15:16, 1/B2/62:64 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_7LS2_184 | 1/B2/21:27, 1/B2/52:57 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_7LS2_185 | 1/B2/28:30, 1/B2/48:51 | No text annotation | ||
| IL_7LS2_319 | 1/B2/28:31, 1/B2/46:51 | No text annotation | homologous IL_7A0S_104 IL_05192.8 | |
| IL_7LS2_186 | 1/B2/30:31, 1/B2/46:48 | Single stack bend | geometric IL_4V9F_081 IL_15011.5 | |
| IL_7LS2_187 | 1/B2/32:36, 1/B2/41:45 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_7LS2_188 | 1/B2/71:78, 1/B2/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_7LS2_189 | 1/B2/79:81, 1/B2/95:97 | Isolated non-canonical cWW pair | geometric IL_4V88_470 NA | |
| IL_7LS2_190 | 1/B2/82:85, 1/B2/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_7LS2_191 | 1/C2/64:66, 1/C2/92:95 | Isolated non-canonical cWW pair | homologous IL_5TBW_145 NA | |
| IL_7LS2_192 | 1/m2/23:25, 1/m2/651:653 | Isolated non-canonical cWW pair | geometric IL_5TBW_112 NA | |
| IL_7LS2_194 | 1/m2/34:36, 1/m2/521:523 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_7LS2_195 | 1/m2/37:40, 1/m2/516:520 | Double sheared | geometric IL_4WF9_016 IL_58355.4 | |
| IL_7LS2_196 | 1/m2/41:47, 1/m2/481:483 | No text annotation | geometric IL_4V88_387 NA | |
| IL_7LS2_197 | 1/m2/49:51, 1/m2/478:479 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_7LS2_198 | 1/m2/56:62, 1/m2/86:89 | Other IL | geometric IL_5TBW_043 NA | |
| IL_7LS2_199 | 1/m2/63:68, 1/m2/81:85 | No text annotation | homologous IL_4V88_390 NA | |
| IL_7LS2_200 | 1/m2/108:110, 1/m2/353:355 | Isolated non-canonical cWW pair | geometric IL_1ZX7_006 IL_71625.5 | |
| IL_7LS2_201 | 1/m2/110:115, 1/m2/350:353 | Tandem non-canonical cWW pairs | homologous IL_8P9A_380 NA | |
| IL_7LS2_322 | 1/m2/116:121, 1/m2/345:349 | No text annotation | homologous IL_8P9A_382 NA | |
| IL_7LS2_323 | 1/m2/145:155, 1/m2/163:174 | No text annotation | ||
| IL_7LS2_204 | 1/m2/218:221, 1/m2/304:311 | No text annotation | ||
| IL_7LS2_208 | 1/m2/361:366, 1/m2/398:405 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_7LS2_209 | 1/m2/368:375, 1/m2/393:396 | No text annotation | ||
| IL_7LS2_210 | 1/m2/413:415, 1/m2/426:431 | No text annotation | homologous IL_4V88_404 NA | |
| IL_7LS2_211 | 1/m2/439:441, 1/m2/456:458 | Isolated non-canonical cWW pair | geometric IL_5TBW_378 NA | |
| IL_7LS2_212 | 1/m2/461:463, 1/m2/470:472 | Isolated non-canonical cWW pair | homologous IL_4V88_406 NA | |
| IL_7LS2_213 | 1/m2/489:491, 1/m2/513:514 | Single bulged U | geometric IL_5J7L_017 NA | |
| IL_7LS2_214 | 1/m2/493:497, 1/m2/510:511 | C-loop | geometric IL_5J7L_018 NA | |
| IL_7LS2_215 | 1/m2/497:498, 1/m2/508:510 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_7LS2_219 | 1/m2/565:567, 1/m2/587:594 | No text annotation | homologous IL_8C3A_420 NA | |
| IL_7LS2_220 | 1/m2/568:571, 1/m2/583:586 | tSH-tHW | geometric IL_5UNE_005 IL_76776.4 | |
| IL_7LS2_221 | 1/m2/601:608, 1/m2/638:639 | SSU/LSU pseudoknot | homologous IL_4V88_413 NA | |
| IL_7LS2_222 | 1/m2/608:610, 1/m2/637:638 | Single bulged U | geometric IL_3D2V_001 IL_97561.7 | |
| IL_7LS2_223 | 1/m2/613:619, 1/m2/626:634 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_7LS2_224 | 1/m2/665:667, 1/m2/1164:1166 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_01003.6 | |
| IL_7LS2_225 | 1/m2/667:673, 1/m2/1163:1164 | No text annotation | homologous IL_4V88_416 NA | |
| IL_7LS2_226 | 1/m2/675:677, 1/m2/1032:1034 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_7LS2_324 | 1/m2/678:683, 1/m2/1026:1031 | No text annotation | geometric IL_8ZA4_001 NA | |
| IL_7LS2_342 | 1/m2/804:805, 1/m2/862:865 | No text annotation | homologous IL_8CRE_428 IL_73108.4 | |
| IL_7LS2_230 | 1/m2/807:809, 1/m2/858:860 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_7LS2_343 | 1/m2/809:817, 1/m2/851:858 | No text annotation | homologous IL_8CRE_430 IL_59049.4 | |
| IL_7LS2_232 | 1/m2/834:835, 1/m2/843:845 | Single stack bend | geometric IL_4V9F_005 IL_15011.5 | |
| IL_7LS2_233 | 1/m2/876:879, 1/m2/912:914 | No text annotation | geometric IL_4N0T_004 IL_32983.3 | |
| IL_7LS2_326 | 1/m2/876:881, 1/m2/909:914 | No text annotation | geometric IL_5TBW_476 NA | |
| IL_7LS2_234 | 1/m2/879:881, 1/m2/909:912 | No text annotation | geometric IL_4V87_185 NA | |
| IL_7LS2_235 | 1/m2/924:925, 1/m2/1021:1024 | Major groove platform; stack outside cWW | homologous IL_4V88_428 NA | |
| IL_7LS2_327 | 1/m2/927:928, 1/m2/1017:1019 | Single bulged U | geometric IL_6UFH_004 IL_97561.7 | |
| IL_7LS2_237 | 1/m2/929:933, 1/m2/1012:1016 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_7LS2_238 | 1/m2/933:937, 1/m2/1009:1012 | Tandem non-canonical cWW pairs | homologous IL_4V88_431 NA | |
| IL_7LS2_239 | 1/m2/944:947, 1/m2/983:986 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_7LS2_240 | 1/m2/954:958, 1/m2/969:976 | Kink-turn | homologous IL_4V88_434 NA | |
| IL_7LS2_241 | 1/m2/1044:1049, 1/m2/1073:1075 | Other IL | geometric IL_4V88_435 NA | |
| IL_7LS2_242 | 1/m2/1049:1053, 1/m2/1069:1073 | tSH-tWH-tHS | homologous IL_4V88_436 NA | |
| IL_7LS2_243 | 1/m2/1093:1095, 1/m2/1154:1160 | No text annotation | homologous IL_4V88_437 NA | |
| IL_7LS2_328 | 1/m2/1096:1098, 1/m2/1138:1153 | No text annotation | ||
| IL_7LS2_244 | 1/m2/1100:1103, 1/m2/1133:1136 | Tandem non-canonical cWW pairs | geometric IL_4V88_438 NA | |
| IL_7LS2_245 | 1/m2/1103:1105, 1/m2/1131:1133 | Isolated non-canonical cWW pair | geometric IL_7A0S_014 IL_01003.6 | |
| IL_7LS2_246 | 1/m2/1110:1112, 1/m2/1125:1126 | Single stack bend | geometric IL_7RQB_058 NA | |
| IL_7LS2_247 | 1/m2/1170:1177, 1/m2/1188:1193 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_7LS2_248 | 1/m2/1205:1206, 1/m2/1696:1698 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_7LS2_249 | 1/m2/1208:1210, 1/m2/1693:1694 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_7LS2_250 | 1/m2/1216:1219, 1/m2/1683:1687 | C-loop | homologous IL_4V88_443 NA | |
| IL_7LS2_251 | 1/m2/1232:1234, 1/m2/1528:1530 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_7LS2_252 | 1/m2/1237:1238, 1/m2/1523:1525 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_7LS2_253 | 1/m2/1272:1275, 1/m2/1512:1514 | No text annotation | geometric IL_4V9F_053 IL_49140.2 | |
| IL_7LS2_344 | 1/m2/1284:1292, 1/m2/1311:1317 | No text annotation | ||
| IL_7LS2_256 | 1/m2/1327:1329, 1/m2/1504:1505 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_7LS2_257 | 1/m2/1331:1335, 1/m2/1500:1502 | Isolated cWS basepair | geometric IL_4V88_450 NA | |
| IL_7LS2_331 | 1/m2/1331:1337, 1/m2/1494:1502 | No text annotation | homologous IL_8P9A_439 NA | |
| IL_7LS2_258 | 1/m2/1335:1337, 1/m2/1494:1500 | Minor groove platform with extra cWW | homologous IL_4V88_451 NA | |
| IL_7LS2_259 | 1/m2/1339:1340, 1/m2/1490:1492 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_7LS2_260 | 1/m2/1349:1351, 1/m2/1382:1384 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_7LS2_261 | 1/m2/1365:1367, 1/m2/1376:1377 | Minor groove platform | homologous IL_4V88_454 NA | |
| IL_7LS2_262 | 1/m2/1397:1401, 1/m2/1449:1452 | No text annotation | geometric IL_1CSL_001 IL_37443.2 | |
| IL_7LS2_263 | 1/m2/1404:1407, 1/m2/1443:1446 | Minor groove platform | homologous IL_4V88_456 NA | |
| IL_7LS2_264 | 1/m2/1410:1411, 1/m2/1434:1440 | Multiple bulged bases | geometric IL_3R2D_001 IL_09092.1 | |
| IL_7LS2_265 | 1/m2/1414:1415, 1/m2/1429:1431 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_7LS2_266 | 1/m2/1418:1419, 1/m2/1424:1426 | No text annotation | ||
| IL_7LS2_267 | 1/m2/1539:1541, 1/m2/1596:1598 | Isolated non-canonical cWW pair | geometric IL_3SZX_002 IL_71625.5 | |
| IL_7LS2_333 | 1/m2/1543:1552, 1/m2/1584:1594 | No text annotation | ||
| IL_7LS2_268 | 1/m2/1552:1560, 1/m2/1579:1584 | No text annotation | ||
| IL_7LS2_269 | 1/m2/1702:1704, 1/m2/1835:1838 | No text annotation | homologous IL_4V88_463 NA | |
| IL_7LS2_270 | 1/m2/1704:1707, 1/m2/1831:1835 | No text annotation | geometric IL_4V88_464 NA | |
| IL_7LS2_271 | 1/m2/1708:1710, 1/m2/1828:1830 | Isolated non-canonical cWW pair | geometric IL_5AOX_001 IL_01003.6 | |
| IL_7LS2_272 | 1/m2/1710:1713, 1/m2/1824:1828 | No text annotation | homologous IL_8C3A_473 NA | |
| IL_7LS2_273 | 1/m2/1716:1718, 1/m2/1819:1821 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_7LS2_274 | 1/m2/1719:1722, 1/m2/1815:1818 | Double sheared | homologous IL_4V88_468 NA | |
| IL_7LS2_275 | 1/m2/1722:1724, 1/m2/1814:1815 | Single bulged U | geometric IL_4V88_469 NA | |
| IL_7LS2_276 | 1/m2/1731:1733, 1/m2/1805:1807 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_7LS2_277 | 1/m2/1735:1738, 1/m2/1800:1803 | Double sheared | homologous IL_4V88_471 NA | |
| IL_7LS2_278 | 1/m2/1741:1743, 1/m2/1795:1797 | Isolated non-canonical cWW pair | geometric IL_3GM7_006 IL_01003.6 | |
| IL_7LS2_279 | 1/m2/1744:1748, 1/m2/1790:1794 | Triple sheared | homologous IL_4V88_474 NA | |
| IL_7LS2_280 | 1/m2/1752:1754, 1/m2/1782:1786 | Major groove platform with extra cWW | geometric IL_4V88_397 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7LS2_282 | Isolated non-canonical cWW pair | ||
| IL_7LS2_283 | No text annotation | ||
| IL_7LS2_010 | Single stack bend | ||
| IL_7LS2_011 | Single stack bend | ||
| IL_7LS2_012 | Single stack bend | ||
| IL_7LS2_284 | No text annotation | ||
| IL_7LS2_335 | Single stack bend | ||
| IL_7LS2_285 | No text annotation | ||
| IL_7LS2_025 | Not an internal loop | ||
| IL_7LS2_286 | No text annotation | ||
| IL_7LS2_027 | Minor groove platform | ||
| IL_7LS2_028 | Minor groove platform | ||
| IL_7LS2_031 | Major groove intercalation | ||
| IL_7LS2_038 | No text annotation | ||
| IL_7LS2_039 | No text annotation | ||
| IL_7LS2_040 | No text annotation | ||
| IL_7LS2_041 | No text annotation | ||
| IL_7LS2_042 | Stack and bulge | ||
| IL_7LS2_043 | No text annotation | ||
| IL_7LS2_044 | Single stack bend | ||
| IL_7LS2_045 | No text annotation | ||
| IL_7LS2_046 | Single stack bend | ||
| IL_7LS2_047 | No text annotation | ||
| IL_7LS2_288 | No text annotation | ||
| IL_7LS2_049 | Multiple bulged bases | ||
| IL_7LS2_050 | No text annotation | ||
| IL_7LS2_289 | Isolated non-canonical cWW pair | ||
| IL_7LS2_058 | No text annotation | ||
| IL_7LS2_062 | No text annotation | ||
| IL_7LS2_294 | Isolated non-canonical cWW pair | ||
| IL_7LS2_067 | 180 degree turn | ||
| IL_7LS2_069 | No text annotation | ||
| IL_7LS2_071 | Minor groove platform | ||
| IL_7LS2_297 | No text annotation | ||
| IL_7LS2_072 | Single bulged U | ||
| IL_7LS2_073 | Isolated cWS basepair | ||
| IL_7LS2_298 | No text annotation | ||
| IL_7LS2_076 | Tandem non-canonical cWW pairs | ||
| IL_7LS2_077 | No text annotation | ||
| IL_7LS2_088 | No text annotation | ||
| IL_7LS2_090 | Tandem non-canonical cWW pairs | ||
| IL_7LS2_094 | No text annotation | ||
| IL_7LS2_096 | Minor groove platform | ||
| IL_7LS2_097 | Isolated non-canonical cWW pair | ||
| IL_7LS2_301 | No text annotation | ||
| IL_7LS2_103 | Single stack bend | ||
| IL_7LS2_303 | No text annotation | ||
| IL_7LS2_115 | Single stack bend | ||
| IL_7LS2_122 | No text annotation | ||
| IL_7LS2_305 | No text annotation | ||
| IL_7LS2_129 | Isolated non-canonical cWW pair | ||
| IL_7LS2_131 | Single bulged C | ||
| IL_7LS2_132 | No text annotation | ||
| IL_7LS2_337 | No text annotation | ||
| IL_7LS2_306 | No text annotation | ||
| IL_7LS2_133 | No text annotation | ||
| IL_7LS2_307 | No text annotation | ||
| IL_7LS2_134 | No text annotation | ||
| IL_7LS2_308 | Single stack bend | ||
| IL_7LS2_138 | Single stack bend | ||
| IL_7LS2_139 | Single bulged U | ||
| IL_7LS2_142 | Decoding loop related | ||
| IL_7LS2_144 | No text annotation | ||
| IL_7LS2_146 | No text annotation | ||
| IL_7LS2_153 | No text annotation | ||
| IL_7LS2_154 | Isolated non-canonical cWW pair | ||
| IL_7LS2_158 | Isolated non-canonical cWW pair | ||
| IL_7LS2_160 | No text annotation | ||
| IL_7LS2_315 | Tandem non-canonical cWW pairs | ||
| IL_7LS2_164 | No text annotation | ||
| IL_7LS2_316 | No text annotation | ||
| IL_7LS2_169 | Single bulged U | ||
| IL_7LS2_170 | Tandem non-canonical cWW pairs | ||
| IL_7LS2_171 | No text annotation | ||
| IL_7LS2_172 | Isolated non-canonical cWW pair | ||
| IL_7LS2_317 | No text annotation | ||
| IL_7LS2_173 | No text annotation | ||
| IL_7LS2_318 | No text annotation | ||
| IL_7LS2_175 | No text annotation | ||
| IL_7LS2_176 | Single bulged U | ||
| IL_7LS2_320 | Tandem non-canonical cWW pairs | ||
| IL_7LS2_193 | No text annotation | ||
| IL_7LS2_321 | No text annotation | ||
| IL_7LS2_202 | No text annotation | ||
| IL_7LS2_203 | Double sheared with non-canonical cWW | ||
| IL_7LS2_205 | No text annotation | ||
| IL_7LS2_206 | Single bulged A | ||
| IL_7LS2_207 | Single stack bend | ||
| IL_7LS2_216 | Single bulged A | ||
| IL_7LS2_217 | Isolated non-canonical cWW pair | ||
| IL_7LS2_218 | No text annotation | ||
| IL_7LS2_340 | Single stack bend | ||
| IL_7LS2_227 | No text annotation | ||
| IL_7LS2_341 | No text annotation | ||
| IL_7LS2_228 | No text annotation | ||
| IL_7LS2_325 | No text annotation | ||
| IL_7LS2_229 | Major groove minor groove platform with extra cWW | ||
| IL_7LS2_231 | No text annotation | ||
| IL_7LS2_236 | Tandem non-canonical cWW pairs | ||
| IL_7LS2_329 | No text annotation | ||
| IL_7LS2_330 | No text annotation | ||
| IL_7LS2_254 | No text annotation | ||
| IL_7LS2_255 | No text annotation | ||
| IL_7LS2_332 | No text annotation | ||
| IL_7LS2_334 | Double sheared with non-canonical cWW | ||
| IL_7LS2_281 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7LS2_001 | 1/A2/112:116, 1/A2/155:160, 1/A2/275:278 | No text annotation | ||
| J3_7LS2_031 | 1/A2/351:367, 1/A2/374:379, 1/C2/21:24 | No text annotation | homologous J3_8C3A_047 NA | |
| J3_7LS2_002 | 1/A2/380:387, 1/A2/414:415, 1/C2/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_7LS2_032 | 1/A2/380:390, 1/A2/401:415, 1/C2/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_7LS2_033 | 1/A2/451:455, 1/A2/708:712, 1/A2/1106:1110 | No text annotation | ||
| J3_7LS2_004 | 1/A2/1344:1350, 1/A2/1435:1437, 1/A2/1453:1456 | No text annotation | homologous J3_5TBW_004 NA | |
| J3_7LS2_005 | 1/A2/1359:1361, 1/A2/1393:1397, 1/A2/1422:1425 | No text annotation | homologous J3_8C3A_004 NA | |
| J3_7LS2_006 | 1/A2/1528:1529, 1/A2/1604:1608, 1/A2/1634:1639 | No text annotation | homologous J3_8P9A_051 NA | |
| J3_7LS2_007 | 1/A2/1771:1773, 1/A2/1797:1805, 1/A2/1818:1820 | No text annotation | ||
| J3_7LS2_034 | 1/A2/1889:1912, 1/A2/2005:2012, 1/A2/2016:2025 | No text annotation | ||
| J3_7LS2_008 | 1/A2/2148:2154, 1/A2/2560:2562, 1/A2/2574:2577 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_7LS2_009 | 1/A2/2157:2160, 1/A2/2540:2546, 1/A2/2555:2557 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_7LS2_010 | 1/A2/2195:2200, 1/A2/2270:2274, 1/A2/2291:2292 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_7LS2_035 | 1/A2/2206:2211, 1/A2/2220:2231, 1/A2/2256:2263 | No text annotation | homologous J3_8C3A_053 NA | |
| J3_7LS2_036 | 1/A2/2353:2357, 1/A2/2492:2493, 1/A2/2497:2502 | No text annotation | homologous J3_8P9A_058 NA | |
| J3_7LS2_011 | 1/A2/3593:3595, 1/A2/3724:3728, 1/A2/3820:3825 | No text annotation | geometric J3_8VTW_006 NA | |
| J3_7LS2_048 | 1/A2/3740:3745, 1/A2/3764:3779, 1/A2/3807:3811 | No text annotation | ||
| J3_7LS2_012 | 1/A2/3741:3745, 1/A2/3764:3779, 1/A2/3807:3811 | No text annotation | ||
| J3_7LS2_038 | 1/A2/3880:3882, 1/A2/3983:3994, 1/A2/4022:4027 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_7LS2_014 | 1/A2/3893:3895, 1/A2/3919:3921, 1/A2/3930:3935 | No text annotation | homologous J3_5TBW_013 NA | |
| J3_7LS2_015 | 1/A2/4115:4118, 1/A2/4143:4145, 1/A2/4159:4165 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_7LS2_040 | 1/A2/4403:4406, 1/A2/4524:4528, 1/A2/4581:4594 | No text annotation | ||
| J3_7LS2_016 | 1/A2/4616:4618, 1/A2/4632:4637, 1/A2/4706:4709 | No text annotation | ||
| J3_7LS2_017 | 1/B2/9:14, 1/B2/65:66, 1/B2/109:110 | No text annotation | homologous J3_5TBW_045 NA | |
| J3_7LS2_018 | 1/C2/44:45, 1/C2/58:64, 1/C2/95:99 | No text annotation | homologous J3_8C3A_060 NA | |
| J3_7LS2_019 | 1/m2/40:41, 1/m2/483:489, 1/m2/514:516 | No text annotation | geometric J3_8C3A_082 NA | |
| J3_7LS2_041 | 1/m2/40:47, 1/m2/481:489, 1/m2/514:516 | No text annotation | homologous J3_8C3A_083 NA | |
| J3_7LS2_020 | 1/m2/684:687, 1/m2/920:924, 1/m2/1024:1025 | No text annotation | ||
| J3_7LS2_042 | 1/m2/684:687, 1/m2/920:925, 1/m2/1021:1025 | No text annotation | ||
| J3_7LS2_043 | 1/m2/818:821, 1/m2/831:833, 1/m2/846:850 | No text annotation | ||
| J3_7LS2_022 | 1/m2/940:943, 1/m2/987:995, 1/m2/1002:1006 | No text annotation | homologous J3_4V88_033 NA | |
| J3_7LS2_023 | 1/m2/1096:1098, 1/m2/1138:1143, 1/m2/1149:1153 | No text annotation | ||
| J3_7LS2_024 | 1/m2/1220:1223, 1/m2/1647:1653, 1/m2/1675:1682 | No text annotation | homologous J3_4V88_035 NA | |
| J3_7LS2_025 | 1/m2/1227:1230, 1/m2/1532:1534, 1/m2/1640:1643 | No text annotation | homologous J3_4V88_036 NA | |
| J3_7LS2_026 | 1/m2/1239:1246, 1/m2/1257:1268, 1/m2/1518:1522 | No text annotation | geometric J3_5J7L_006 NA | |
| J3_7LS2_046 | 1/m2/1275:1279, 1/m2/1322:1326, 1/m2/1506:1512 | No text annotation | ||
| J3_7LS2_028 | 1/m2/1342:1347, 1/m2/1386:1391, 1/m2/1483:1488 | No text annotation | homologous J3_4V88_039 NA | |
| J3_7LS2_029 | 1/m2/1352:1353, 1/m2/1362:1365, 1/m2/1377:1381 | No text annotation | homologous J3_8C3A_085 NA | |
| J3_7LS2_030 | 1/m2/1393:1397, 1/m2/1452:1458, 1/m2/1472:1481 | No text annotation | ||
| J3_7LS2_047 | 1/m2/1534:1538, 1/m2/1599:1612, 1/m2/1631:1640 | No text annotation | ||
| J4_7LS2_001 | 1/A2/111:112, 1/A2/278:283, 1/A2/304:310, 1/A2/327:330 | No text annotation | homologous J4_8P9A_012 NA | |
| J4_7LS2_002 | 1/A2/196:199, 1/A2/215:222, 1/A2/226:228, 1/A2/240:244 | No text annotation | ||
| J4_7LS2_015 | 1/A2/881:883, 1/A2/925:929, 1/A2/1062:1068, 1/A2/1081:1087 | No text annotation | ||
| J4_7LS2_004 | 1/A2/2119:2126, 1/A2/2144:2146, 1/A2/2579:2584, 1/A2/3512:3514 | No text annotation | ||
| J4_7LS2_005 | 1/A2/2161:2165, 1/A2/2189:2194, 1/A2/2293:2294, 1/A2/2532:2539 | No text annotation | homologous J4_8C3A_004 NA | |
| J4_7LS2_016 | 1/A2/2306:2310, 1/A2/2327:2331, 1/A2/2340:2344, 1/A2/2511:2522 | No text annotation | ||
| J4_7LS2_017 | 1/A2/2373:2374, 1/A2/2392:2397, 1/A2/2447:2453, 1/A2/2473:2474 | No text annotation | ||
| J4_7LS2_008 | 1/A2/3290:3294, 1/A2/3306:3310, 1/A2/3346:3350, 1/A2/3477:3482 | No text annotation | homologous J4_8P9A_017 NA | |
| J4_7LS2_009 | 1/A2/3352:3354, 1/A2/3408:3409, 1/A2/3427:3436, 1/A2/3470:3475 | No text annotation | homologous J4_8P9A_018 NA | |
| J4_7LS2_018 | 1/A2/3883:3889, 1/A2/3939:3943, 1/A2/3970:3971, 1/A2/3980:3982 | No text annotation | ||
| J4_7LS2_011 | 1/A2/4239:4242, 1/A2/4272:4273, 1/A2/4328:4330, 1/A2/4364:4367 | No text annotation | ||
| J4_7LS2_012 | 1/m2/98:106, 1/m2/357:359, 1/m2/407:411, 1/m2/433:434 | No text annotation | homologous J4_8P9A_021 NA | |
| J4_7LS2_013 | 1/m2/673:675, 1/m2/1034:1039, 1/m2/1080:1091, 1/m2/1162:1163 | No text annotation | homologous J4_8C3A_022 NA | |
| J4_7LS2_014 | 1/n2/8:11, 1/n2/25:27, 1/n2/43:49, 1/n2/65:66 | tRNA junction | homologous J4_7K98_001 J4_95067.2 | |
| J5_7LS2_001 | 1/A2/19:21, 1/C2/35:42, 1/C2/101:106, 1/C2/113:114, 1/C2/136:138 | No text annotation | homologous J5_8P9A_010 NA | |
| J5_7LS2_002 | 1/A2/1149:1154, 1/A2/1329:1332, 1/A2/1471:1474, 1/A2/2043:2045, 1/A2/2100:2106 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_7LS2_003 | 1/A2/2610:2618, 1/A2/2642:2643, 1/A2/3269:3270, 1/A2/3274:3282, 1/A2/3491:3493 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_7LS2_004 | 1/A2/3559:3566, 1/A2/4044:4052, 1/A2/4096:4105, 1/A2/4180:4186, 1/A2/4204:4209 | No text annotation | ||
| J5_7LS2_009 | 1/A2/3576:3579, 1/A2/3840:3843, 1/A2/3856:3857, 1/A2/3879:3880, 1/A2/4027:4033 | No text annotation | homologous J5_8P9A_015 NA | |
| J5_7LS2_006 | 1/m2/30:34, 1/m2/523:529, 1/m2/560:565, 1/m2/594:597, 1/m2/643:646 | No text annotation | homologous J5_8C3A_018 NA | |
| J5_7LS2_007 | 1/m2/30:34, 1/m2/523:529, 1/m2/560:567, 1/m2/587:597, 1/m2/643:646 | No text annotation | ||
| J5_7LS2_008 | 1/m2/53:62, 1/m2/86:96, 1/m2/436:438, 1/m2/459:461, 1/m2/472:476 | No text annotation | ||
| J6_7LS2_001 | 1/A2/21:26, 1/A2/57:67, 1/A2/74:78, 1/A2/105:109, 1/A2/332:339, 1/C2/33:35 | No text annotation | ||
| J6_7LS2_002 | 1/A2/1166:1169, 1/A2/1198:1202, 1/A2/1209:1213, 1/A2/1231:1234, 1/A2/1277:1279, 1/A2/1312:1317 | No text annotation | ||
| J6_7LS2_003 | 1/A2/3575:3579, 1/A2/3840:3843, 1/A2/3856:3857, 1/A2/3879:3882, 1/A2/3983:3994, 1/A2/4022:4034 | No text annotation | ||
| J6_7LS2_004 | 1/A2/3576:3579, 1/A2/3840:3843, 1/A2/3856:3857, 1/A2/3879:3882, 1/A2/3983:3994, 1/A2/4022:4033 | No text annotation | ||
| J7_7LS2_001 | 1/A2/1479:1484, 1/A2/1497:1498, 1/A2/1654:1657, 1/A2/1681:1686, 1/A2/1697:1701, 1/A2/1879:1880, 1/A2/2033:2038 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7LS2_003 | No text annotation | ||
| J3_7LS2_037 | No text annotation | ||
| J3_7LS2_013 | No text annotation | ||
| J3_7LS2_039 | No text annotation | ||
| J3_7LS2_021 | No text annotation | ||
| J3_7LS2_044 | No text annotation | ||
| J3_7LS2_045 | No text annotation | ||
| J3_7LS2_027 | No text annotation | ||
| J4_7LS2_003 | No text annotation | ||
| J4_7LS2_006 | No text annotation | ||
| J4_7LS2_007 | No text annotation | ||
| J4_7LS2_010 | No text annotation | ||
| J5_7LS2_005 | No text annotation |
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