HL_7LS2_010

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCGUAA(OMG)G

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS2_010 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3815

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7LS2|1|A2|C|367
7LS2|1|A2|C|368
7LS2|1|A2|G|369
7LS2|1|A2|U|370
7LS2|1|A2|A|371
7LS2|1|A2|A|372
7LS2|1|A2|OMG|373
7LS2|1|A2|G|374

Current chains

Chain A2

28S rRNA

Nearby chains

Chain F2

60S ribosomal protein L4

Chain d2

60S ribosomal protein L37

Chain f2

60S ribosomal protein L39