HL_7LS2_013

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGACUGUCCCCAGUGCG

Length

18 nucleotides

Bulged bases

7LS2|1|A2|G|1010, 7LS2|1|A2|U|1011, 7LS2|1|A2|C|1013, 7LS2|1|A2|C|1014

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7LS2|1|A2|C|1004
7LS2|1|A2|G|1005
7LS2|1|A2|G|1006
7LS2|1|A2|A|1007
7LS2|1|A2|C|1008
7LS2|1|A2|U|1009
7LS2|1|A2|G|1010
7LS2|1|A2|U|1011
7LS2|1|A2|C|1012
7LS2|1|A2|C|1013
7LS2|1|A2|C|1014
7LS2|1|A2|C|1015
7LS2|1|A2|A|1016
7LS2|1|A2|G|1017
7LS2|1|A2|U|1018
7LS2|1|A2|G|1019
7LS2|1|A2|C|1020
7LS2|1|A2|G|1021

Current chains

Chain A2

28S rRNA

Nearby chains

Chain B2

5S ribosomal RNA; 5S rRNA

Chain D1

60S ribosomal protein L10-like

Chain G2

60S ribosomal protein L5