HL_7LS2_016
3D structure
- PDB id
- 7LS2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUCGUCCGAAAG
- Length
- 12 nucleotides
- Bulged bases
- 7LS2|1|A2|C|1179, 7LS2|1|A2|G|1180, 7LS2|1|A2|U|1181, 7LS2|1|A2|A|1185
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7LS2_016 not in the Motif Atlas
- Geometric match to HL_2ZNI_001
- Geometric discrepancy: 0.343
- The information below is about HL_2ZNI_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.10
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
7LS2|1|A2|C|1177
7LS2|1|A2|U|1178
7LS2|1|A2|C|1179
7LS2|1|A2|G|1180
7LS2|1|A2|U|1181
7LS2|1|A2|C|1182
7LS2|1|A2|C|1183
7LS2|1|A2|G|1184
7LS2|1|A2|A|1185
7LS2|1|A2|A|1186
7LS2|1|A2|A|1187
7LS2|1|A2|G|1188
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain F1
- 60S ribosomal protein L13
- Chain F2
- 60S ribosomal protein L4
- Chain H1
- 60S ribosomal protein L15
- Chain S2
- 60S ribosomal protein L26
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