HL_7LS2_021

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS2_021 not in the Motif Atlas

Homologous match to HL_5TBW_019

Geometric discrepancy: 0.0851

The information below is about HL_5TBW_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7LS2|1|A2|G|1374
7LS2|1|A2|G|1375
7LS2|1|A2|A|1376
7LS2|1|A2|A|1377
7LS2|1|A2|A|1378
7LS2|1|A2|C|1379

Current chains

Chain A2

28S rRNA

Nearby chains

Chain N3

40S ribosomal protein S13

Chain m2

Small subunit ribosomal RNA; SSU rRNA

Chain w2

40S ribosomal protein S11