HL_7LS2_025

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAAC

Length

5 nucleotides

Bulged bases

7LS2|1|A2|A|1569

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS2_025 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.3019

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.10

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7LS2|1|A2|G|1566
7LS2|1|A2|A|1567
7LS2|1|A2|A|1568
7LS2|1|A2|A|1569
7LS2|1|A2|C|1570

Current chains

Chain A2

28S rRNA

Nearby chains

Chain U3

Ubiquitin-40S ribosomal protein S27a

Chain m2

Small subunit ribosomal RNA; SSU rRNA

Chain x2

40S ribosomal protein S15