HL_7LS2_026

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGCGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS2_026 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3956

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.2

Basepair signature

cWW-cWW

Number of instances in this motif group

3

Unit IDs

7LS2|1|A2|C|1618
7LS2|1|A2|U|1619
7LS2|1|A2|G|1620
7LS2|1|A2|G|1621
7LS2|1|A2|C|1622
7LS2|1|A2|G|1623
7LS2|1|A2|U|1624
7LS2|1|A2|G|1625

Current chains

Chain A2

28S rRNA

Nearby chains

Chain G2

60S ribosomal protein L5

Chain N2

60S ribosomal protein L21

Chain V2

60S ribosomal protein L29