HL_7LS2_033

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS2_033 not in the Motif Atlas

Homologous match to HL_8C3A_030

Geometric discrepancy: 0.1394

The information below is about HL_8C3A_030

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7LS2|1|A2|C|2072
7LS2|1|A2|G|2073
7LS2|1|A2|C|2074
7LS2|1|A2|G|2075
7LS2|1|A2|G|2076
7LS2|1|A2|G|2077

Current chains

Chain A2

28S rRNA

Nearby chains

Chain Y2

60S ribosomal protein L32

Chain k2

60S ribosomal protein L28