HL_7LS2_041

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

7LS2|1|A2|U|2386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS2_041 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.1839

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7LS2|1|A2|G|2379
7LS2|1|A2|U|2380
7LS2|1|A2|U|2381
7LS2|1|A2|C|2382
7LS2|1|A2|U|2383
7LS2|1|A2|C|2384
7LS2|1|A2|U|2385
7LS2|1|A2|U|2386
7LS2|1|A2|U|2387

Current chains

Chain A2

28S rRNA

Nearby chains

Chain L2

60S ribosomal protein L19

Chain O2

60S ribosomal protein L22