HL_7LS2_058

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

C(I4U)G(OMG)GGCGG

Length

9 nucleotides

Bulged bases

7LS2|1|A2|G|3847

QA status

Modified nucleotides: I4U, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS2_058 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1179

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

7LS2|1|A2|C|3845
7LS2|1|A2|I4U|3846
7LS2|1|A2|G|3847
7LS2|1|A2|OMG|3848
7LS2|1|A2|G|3849
7LS2|1|A2|G|3850
7LS2|1|A2|C|3851
7LS2|1|A2|G|3852
7LS2|1|A2|G|3853

Current chains

Chain A2

28S rRNA

Nearby chains

Chain D1

60S ribosomal protein L10-like

Chain V2

60S ribosomal protein L29