HL_7LS2_075

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS2_075 not in the Motif Atlas

Geometric match to HL_5WTI_001

Geometric discrepancy: 0.3536

The information below is about HL_5WTI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34080.1

Basepair signature

cWW-cWH-F

Number of instances in this motif group

4

Unit IDs

7LS2|1|A2|C|4667
7LS2|1|A2|U|4668
7LS2|1|A2|C|4669
7LS2|1|A2|C|4670
7LS2|1|A2|C|4671
7LS2|1|A2|U|4672
7LS2|1|A2|C|4673
7LS2|1|A2|G|4674

Current chains

Chain A2

28S rRNA

Nearby chains

Chain O2

60S ribosomal protein L22

Chain u

40S ribosomal protein S8