HL_7LS2_094

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS2_094 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.2227

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7LS2|1|m2|A|571
7LS2|1|m2|C|572
7LS2|1|m2|U|573
7LS2|1|m2|U|574
7LS2|1|m2|U|575
7LS2|1|m2|A|576
7LS2|1|m2|A|577
7LS2|1|m2|A|578
7LS2|1|m2|U|579
7LS2|1|m2|C|580
7LS2|1|m2|C|581
7LS2|1|m2|U|582
7LS2|1|m2|U|583

Current chains

Chain m2

18S rRNA

Nearby chains

Chain L3

40S ribosomal protein S9

Chain Q3

40S ribosomal protein S24