HL_7LS2_103

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUCCCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS2_103 not in the Motif Atlas

Geometric match to HL_1U6B_002

Geometric discrepancy: 0.3169

The information below is about HL_1U6B_002

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12125.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7LS2|1|m2|U|1116
7LS2|1|m2|U|1117
7LS2|1|m2|C|1118
7LS2|1|m2|C|1119
7LS2|1|m2|C|1120
7LS2|1|m2|A|1121

Current chains

Chain m2

18S rRNA

Nearby chains

Chain S3

40S ribosomal protein S27-like

Chain p2

40S ribosomal protein S3a