HL_7LS2_111

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

7LS2|1|m2|U|1464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS2_111 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.2614

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

7LS2|1|m2|C|1462
7LS2|1|m2|G|1463
7LS2|1|m2|U|1464
7LS2|1|m2|U|1465
7LS2|1|m2|C|1466
7LS2|1|m2|A|1467
7LS2|1|m2|G|1468

Current chains

Chain m2

18S rRNA

Nearby chains

Chain I3

Receptor of activated protein C kinase 1

Chain z2

40S ribosomal protein S17