HL_7LVK_016

3D structure

PDB id

7LVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cfr-modified 50S subunit from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

7LVK|1|I|U|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LVK_016 not in the Motif Atlas

Homologous match to HL_5J7L_149

Geometric discrepancy: 0.4732

The information below is about HL_5J7L_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_09452.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

7LVK|1|I|G|543
7LVK|1|I|C|544
7LVK|1|I|U|545
7LVK|1|I|U|546
7LVK|1|I|A|547
7LVK|1|I|G|548
7LVK|1|I|G|549
7LVK|1|I|C|550

Current chains

Chain I

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L13

Chain Z

50S ribosomal protein L21