HL_7LVK_056

3D structure

PDB id

7LVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cfr-modified 50S subunit from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LVK_056 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.109

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

7LVK|1|I|U|2324
7LVK|1|I|G|2325
7LVK|1|I|C|2326
7LVK|1|I|A|2327
7LVK|1|I|A|2328
7LVK|1|I|U|2329
7LVK|1|I|G|2330
7LVK|1|I|G|2331

Current chains

Chain I

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L5

Chain U

50S ribosomal protein L16

Chain e

50S ribosomal protein L27