HL_7LVK_066

3D structure

PDB id

7LVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cfr-modified 50S subunit from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7LVK|1|I|G|2751, 7LVK|1|I|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LVK_066 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0677

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7LVK|1|I|C|2745
7LVK|1|I|U|2746
7LVK|1|I|G|2747
7LVK|1|I|A|2748
7LVK|1|I|A|2749
7LVK|1|I|A|2750
7LVK|1|I|G|2751
7LVK|1|I|C|2752
7LVK|1|I|A|2753
7LVK|1|I|U|2754
7LVK|1|I|C|2755
7LVK|1|I|U|2756
7LVK|1|I|A|2757
7LVK|1|I|A|2758
7LVK|1|I|G|2759

Current chains

Chain I

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L6

Chain R

50S ribosomal protein L13

Chain m

50S ribosomal protein L36