7LYF Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7LYF_001 | 1/A/13:22 | tRNA D-loop HL_20490.1 | ||
| HL_7LYF_002 | 1/A/59:65 | UNCG variation HL_61337.3 | ||
| HL_7LYF_003 | 1/A/116:124 | T-loop with 2 stacked bulged bases HL_33597.3 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7LYF_001 | 1/A/39:42, 1/A/90:94 | Isolated cWH basepair with non-canonical cWW IL_71194.2 | ||
| IL_7LYF_002 | 1/A/46:48, 1/A/84:86 | Isolated non-canonical cWW pair IL_87720.1 | ||
| IL_7LYF_003 | 1/A/49:50, 1/A/73:83 | No text annotation IL_17790.1 | ||
| IL_7LYF_004 | 1/A/51:54, 1/A/70:72 | Isolated non-canonical cWW pair IL_01003.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7LYF_005 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_7LYF_001 | 1/A/7:10, 1/A/25:27, 1/A/106:112, 1/A/128:129 | Virus junction J4_95067.1 |
Problematic loops
No problematic loops
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