HL_7M4V_070

3D structure

PDB id

7M4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 50S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

7M4V|1|A|U|955, 7M4V|1|A|C|958

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7M4V_070 not in the Motif Atlas

Homologous match to HL_5J7L_211

Geometric discrepancy: 0.1119

The information below is about HL_5J7L_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7M4V|1|A|PSU|952
7M4V|1|A|G|953
7M4V|1|A|C|954
7M4V|1|A|U|955
7M4V|1|A|A|956
7M4V|1|A|A|957
7M4V|1|A|C|958
7M4V|1|A|G|959

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L16