HL_7M4W_096

3D structure

PDB id

7M4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S Empty

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GUGACAAAC

Length

9 nucleotides

Bulged bases

7M4W|1|a|C|1165

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7M4W_096 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3196

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7M4W|1|a|G|1161
7M4W|1|a|U|1162
7M4W|1|a|G|1163
7M4W|1|a|A|1164
7M4W|1|a|C|1165
7M4W|1|a|A|1166
7M4W|1|a|A|1167
7M4W|1|a|A|1168
7M4W|1|a|C|1169

Current chains

Chain a

16s Ribosomal RNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain g

30S ribosomal protein S7