HL_7M4Y_009

3D structure

PDB id

7M4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUGGGAAG

Length

8 nucleotides

Bulged bases

7M4Y|1|A|A|313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7M4Y_009 not in the Motif Atlas

Geometric match to HL_5DH6_002

Geometric discrepancy: 0.1047

The information below is about HL_5DH6_002

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

7M4Y|1|A|C|307
7M4Y|1|A|U|308
7M4Y|1|A|G|309
7M4Y|1|A|G|310
7M4Y|1|A|G|311
7M4Y|1|A|A|312
7M4Y|1|A|A|313
7M4Y|1|A|G|314

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L24