HL_7M4Y_063

3D structure

PDB id

7M4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7M4Y|1|A|G|2747, 7M4Y|1|A|C|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7M4Y_063 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0924

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7M4Y|1|A|C|2741
7M4Y|1|A|U|2742
7M4Y|1|A|G|2743
7M4Y|1|A|A|2744
7M4Y|1|A|A|2745
7M4Y|1|A|A|2746
7M4Y|1|A|G|2747
7M4Y|1|A|C|2748
7M4Y|1|A|A|2749
7M4Y|1|A|U|2750
7M4Y|1|A|C|2751
7M4Y|1|A|U|2752
7M4Y|1|A|A|2753
7M4Y|1|A|A|2754
7M4Y|1|A|G|2755

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain I

50S ribosomal protein L13