HL_7M4Z_009

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

CUGGGAAG

Length

8 nucleotides

Bulged bases

7M4Z|1|A|A|313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7M4Z_009 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.1232

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

7M4Z|1|A|C|307
7M4Z|1|A|U|308
7M4Z|1|A|G|309
7M4Z|1|A|G|310
7M4Z|1|A|G|311
7M4Z|1|A|A|312
7M4Z|1|A|A|313
7M4Z|1|A|G|314

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L24