7M4Z Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7M4Z_001 | 1/A/66:75 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_7M4Z_102 | 1/A/88:112 | No text annotation | ||
| HL_7M4Z_002 | 1/A/92:105 | No text annotation | geometric HL_8KAH_003 NA | |
| HL_7M4Z_003 | 1/A/130:135 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
| HL_7M4Z_004 | 1/A/144:149 | No text annotation | geometric HL_1WZ2_007 HL_75660.5 | |
| HL_7M4Z_005 | 1/A/165:175 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
| HL_7M4Z_006 | 1/A/201:208 | No text annotation | homologous HL_4WF9_006 HL_30068.2 | |
| HL_7M4Z_007 | 1/A/232:237 | No text annotation | geometric HL_2Y9H_003 HL_75660.5 | |
| HL_7M4Z_008 | 1/A/253:259 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_7M4Z_009 | 1/A/307:314 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 HL_01609.3 | |
| HL_7M4Z_010 | 1/A/321:325 | No text annotation | homologous HL_5J7L_143 HL_75660.5 | |
| HL_7M4Z_011 | 1/A/329:337 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_7M4Z_012 | 1/A/381:391 | No text annotation | homologous HL_5J7L_145 HL_91503.7 | |
| HL_7M4Z_013 | 1/A/409:416 | Pseudoknot geometry | homologous HL_7A0S_014 HL_30680.3 | |
| HL_7M4Z_014 | 1/A/461:466 | GNRA | homologous HL_4WF9_015 HL_37824.7 | |
| HL_7M4Z_015 | 1/A/486:492 | GNRA | homologous HL_5J7L_148 HL_37824.7 | |
| HL_7M4Z_016 | 1/A/542:548 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_7M4Z_017 | 1/A/564:573 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_150 HL_28252.6 | |
| HL_7M4Z_018 | 1/A/609:615 | No text annotation | homologous HL_5J7L_151 HL_80922.2 | |
| HL_7M4Z_019 | 1/A/627:632 | GNRA | homologous HL_5J7L_152 HL_37824.7 | |
| HL_7M4Z_020 | 1/A/639:645 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_7M4Z_021 | 1/A/710:717 | GNRA wlth tandem sheared | homologous HL_5J7L_154 HL_81538.2 | |
| HL_7M4Z_022 | 1/A/742:751 | No text annotation | homologous HL_4WF9_023 HL_88205.2 | |
| HL_7M4Z_023 | 1/A/777:783 | No text annotation | homologous HL_5J7L_156 HL_87954.2 | |
| HL_7M4Z_024 | 1/A/824:829 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_7M4Z_103 | 1/A/952:959 | GNRA | homologous HL_5J7L_211 HL_37824.7 | |
| HL_7M4Z_027 | 1/A/975:982 | No text annotation | homologous HL_4WF9_028 HL_42998.2 | |
| HL_7M4Z_028 | 1/A/1169:1173 | No text annotation | geometric HL_6U8D_003 HL_32346.3 | |
| HL_7M4Z_029 | 1/A/1217:1222 | GNRA | homologous HL_7A0S_031 HL_37824.7 | |
| HL_7M4Z_030 | 1/A/1276:1284 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 HL_28252.6 | |
| HL_7M4Z_031 | 1/A/1319:1325 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 HL_57176.2 | |
| HL_7M4Z_032 | 1/A/1358:1363 | GNRA | homologous HL_5J7L_167 HL_37824.7 | |
| HL_7M4Z_033 | 1/A/1384:1393 | No text annotation | homologous HL_5J7L_168 HL_81545.2 | |
| HL_7M4Z_034 | 1/A/1446:1454 | Mini UNCG with extended bulge | geometric HL_5J7L_169 HL_22622.1 | |
| HL_7M4Z_035 | 1/A/1487:1493 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 HL_57176.2 | |
| HL_7M4Z_036 | 1/A/1530:1535 | Mini UNCG | geometric HL_8SP9_002 HL_56334.1 | |
| HL_7M4Z_037 | 1/A/1563:1566 | Mini UNCG | homologous HL_7A0S_039 HL_48778.2 | |
| HL_7M4Z_038 | 1/A/1610:1617 | No text annotation | homologous HL_4WF9_038 HL_89567.2 | |
| HL_7M4Z_039 | 1/A/1628:1634 | GNRA | homologous HL_5J7L_174 HL_37824.7 | |
| HL_7M4Z_040 | 1/A/1689:1694 | No text annotation | homologous HL_7RQB_042 NA | |
| HL_7M4Z_041 | 1/A/1723:1729 | No text annotation | geometric HL_8C3A_039 NA | |
| HL_7M4Z_042 | 1/A/1748:1752 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_7M4Z_043 | 1/A/1773:1783 | No text annotation | homologous HL_4WF9_043 HL_01962.2 | |
| HL_7M4Z_044 | 1/A/1802:1807 | GNRA | homologous HL_7RQB_046 NA | |
| HL_7M4Z_045 | 1/A/1864:1869 | GNRA variation | homologous HL_5J7L_180 HL_37824.7 | |
| HL_7M4Z_046 | 1/A/1906:1916 | No text annotation | homologous HL_5J7L_181 HL_25847.2 | |
| HL_7M4Z_047 | 1/A/1945:1953 | No text annotation | homologous HL_5J7L_182 HL_20167.2 | |
| HL_7M4Z_048 | 1/A/2023:2032 | No text annotation | homologous HL_5J7L_183 HL_61996.2 | |
| HL_7M4Z_050 | 1/A/2205:2211 | No text annotation | homologous HL_5J7L_185 HL_49922.4 | |
| HL_7M4Z_051 | 1/A/2244:2252 | No text annotation | homologous HL_7A0S_052 HL_85367.2 | |
| HL_7M4Z_052 | 1/A/2260:2272 | No text annotation | homologous HL_5J7L_187 HL_91939.2 | |
| HL_7M4Z_104 | 1/A/2300:2308 | No text annotation | homologous HL_5J7L_219 HL_50860.2 | |
| HL_7M4Z_054 | 1/A/2320:2327 | Pseudoknot geometry | homologous HL_4WF9_052 HL_93324.4 | |
| HL_7M4Z_055 | 1/A/2351:2358 | GNRA with extra cWW | homologous HL_4WF9_053 HL_04259.3 | |
| HL_7M4Z_056 | 1/A/2370:2375 | GNRA | homologous HL_5J7L_191 HL_37824.7 | |
| HL_7M4Z_057 | 1/A/2400:2409 | No text annotation | homologous HL_5J7L_192 HL_53454.2 | |
| HL_7M4Z_058 | 1/A/2467:2475 | No text annotation | homologous HL_5J7L_193 HL_32735.2 | |
| HL_7M4Z_059 | 1/A/2524:2531 | No text annotation | homologous HL_5J7L_194 HL_31585.3 | |
| HL_7M4Z_060 | 1/A/2547:2553 | No text annotation | homologous HL_5J7L_195 HL_30068.2 | |
| HL_7M4Z_061 | 1/A/2590:2595 | GNRA | homologous HL_7RQB_063 NA | |
| HL_7M4Z_062 | 1/A/2654:2659 | GNRA | geometric HL_7A0S_063 HL_37824.7 | |
| HL_7M4Z_063 | 1/A/2697:2702 | Ribsomal LSU H95 | homologous HL_5J7L_198 HL_65794.5 | |
| HL_7M4Z_064 | 1/A/2741:2755 | No text annotation | homologous HL_5J7L_199 HL_74055.2 | |
| HL_7M4Z_065 | 1/A/2792:2795 | Mini UNCG with extended bulge | geometric HL_7A0S_017 HL_48778.2 | |
| HL_7M4Z_066 | 1/A/2815:2823 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_7M4Z_067 | 1/A/2852:2857 | GNRA | homologous HL_7A0S_068 HL_37824.7 | |
| HL_7M4Z_107 | 1/B/32:46 | No text annotation | homologous HL_4V9F_074 HL_97756.2 | |
| HL_7M4Z_068 | 1/B/36:42 | No text annotation | homologous HL_5J7L_203 HL_47787.2 | |
| HL_7M4Z_069 | 1/B/83:88 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_7M4Z_070 | 1/a/14:24 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
| HL_7M4Z_071 | 1/a/82:85 | Mini UNCG | geometric HL_5U30_001 HL_48778.2 | |
| HL_7M4Z_072 | 1/a/154:159 | GNRA | homologous HL_5J7L_003 HL_37824.7 | |
| HL_7M4Z_073 | 1/a/182:187 | UNCG | geometric HL_4PDB_001 HL_34617.5 | |
| HL_7M4Z_074 | 1/a/203:208 | No text annotation | geometric HL_1WZ2_007 HL_75660.5 | |
| HL_7M4Z_075 | 1/a/255:263 | GNRA related | homologous HL_5J7L_006 HL_84299.4 | |
| HL_7M4Z_076 | 1/a/292:297 | GNRA | homologous HL_5J7L_007 HL_37824.7 | |
| HL_7M4Z_077 | 1/a/316:329 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_7M4Z_078 | 1/a/338:343 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
| HL_7M4Z_079 | 1/a/375:380 | GNRA | homologous HL_5J7L_010 HL_37824.7 | |
| HL_7M4Z_080 | 1/a/415:420 | No text annotation | geometric HL_5TBW_018 NA | |
| HL_7M4Z_081 | 1/a/458:466 | GNRA related | homologous HL_5J7L_012 HL_81538.2 | |
| HL_7M4Z_106 | 1/a/519:524 | GNRA variation | homologous HL_5J7L_205 HL_37824.7 | |
| HL_7M4Z_083 | 1/a/614:620 | No text annotation | homologous HL_4LFB_014 HL_10453.3 | |
| HL_7M4Z_084 | 1/a/686:695 | No text annotation | homologous HL_5J7L_015 HL_75293.5 | |
| HL_7M4Z_085 | 1/a/723:728 | GNRA | homologous HL_5J7L_016 HL_37824.7 | |
| HL_7M4Z_086 | 1/a/783:793 | No text annotation | homologous HL_5J7L_017 HL_75293.5 | |
| HL_7M4Z_087 | 1/a/838:842 | No text annotation | ||
| HL_7M4Z_088 | 1/a/859:864 | GNRA | homologous HL_4LFB_019 HL_37824.7 | |
| HL_7M4Z_089 | 1/a/894:899 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
| HL_7M4Z_090 | 1/a/960:969 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_7M4Z_091 | 1/a/1009:1014 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_7M4Z_092 | 1/a/1025:1030 | No text annotation | geometric HL_2Y9H_003 HL_75660.5 | |
| HL_7M4Z_093 | 1/a/1073:1078 | GNRA | homologous HL_4LFB_024 HL_37824.7 | |
| HL_7M4Z_094 | 1/a/1086:1093 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_7M4Z_095 | 1/a/1131:1137 | No text annotation | homologous HL_4LFB_026 HL_87954.2 | |
| HL_7M4Z_096 | 1/a/1162:1168 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
| HL_7M4Z_097 | 1/a/1262:1267 | GNRA | homologous HL_4LFB_028 HL_37824.7 | |
| HL_7M4Z_098 | 1/a/1311:1320 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_7M4Z_099 | 1/a/1353:1363 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_7M4Z_100 | 1/a/1446:1451 | GNRA | geometric HL_4Y1M_003 HL_37824.7 | |
| HL_7M4Z_101 | 1/a/1512:1517 | GNRA | homologous HL_4LFB_032 HL_37824.7 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7M4Z_025 | No text annotation | ||
| HL_7M4Z_026 | No text annotation | ||
| HL_7M4Z_049 | No text annotation | ||
| HL_7M4Z_053 | No text annotation | ||
| HL_7M4Z_105 | No text annotation | ||
| HL_7M4Z_082 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7M4Z_001 | 1/A/31:37, 1/A/509:515 | Triple sheared with non-canonical cWW | geometric IL_4WF9_001 IL_04021.2 | |
| IL_7M4Z_002 | 1/A/43:44, 1/A/441:443 | Single bulged A | homologous IL_5J7L_246 IL_31462.5 | |
| IL_7M4Z_003 | 1/A/50:51, 1/A/433:435 | Minor groove platform | homologous IL_5J7L_247 IL_51454.2 | |
| IL_7M4Z_004 | 1/A/88:92, 1/A/105:112 | Kink-turn | geometric IL_6UFG_001 IL_01488.3 | |
| IL_7M4Z_005 | 1/A/190:191, 1/A/219:221 | Single stack bend | homologous IL_7A0S_005 IL_90729.1 | |
| IL_7M4Z_006 | 1/A/195:201, 1/A/208:215 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7A0S_006 IL_04346.10 | |
| IL_7M4Z_007 | 1/A/246:252, 1/A/260:265 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 IL_26307.2 | |
| IL_7M4Z_008 | 1/A/276:279, 1/A/366:369 | No text annotation | ||
| IL_7M4Z_176 | 1/A/276:282, 1/A/362:369 | No text annotation | ||
| IL_7M4Z_009 | 1/A/279:282, 1/A/362:366 | No text annotation | geometric IL_5J7L_299 IL_68574.4 | |
| IL_7M4Z_010 | 1/A/295:297, 1/A/345:349 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_7M4Z_011 | 1/A/305:307, 1/A/314:316 | Isolated non-canonical cWW pair | geometric IL_2O3V_004 IL_28037.2 | |
| IL_7M4Z_012 | 1/A/480:483, 1/A/495:508 | No text annotation | geometric IL_7RQB_014 NA | |
| IL_7M4Z_013 | 1/A/535:538, 1/A/552:555 | Double sheared | homologous IL_5J7L_256 IL_09705.15 | |
| IL_7M4Z_014 | 1/A/562:564, 1/A/573:575 | Isolated non-canonical cWW pair | geometric IL_4WF9_017 IL_07785.1 | |
| IL_7M4Z_015 | 1/A/604:608, 1/A/616:620 | AAA cross-strand stack | homologous IL_7RQB_016 NA | |
| IL_7M4Z_016 | 1/A/670:672, 1/A/804:806 | No text annotation | homologous IL_7RQB_017 NA | |
| IL_7M4Z_017 | 1/A/672:676, 1/A/797:804 | tHW-tHW cross-strand stack | geometric IL_7RQB_018 NA | |
| IL_7M4Z_018 | 1/A/695:696, 1/A/761:763 | Single bulged A | geometric IL_5J7L_261 IL_31462.5 | |
| IL_7M4Z_019 | 1/A/700:701, 1/A/726:728 | Single bulged G | homologous IL_7RQB_020 NA | |
| IL_7M4Z_020 | 1/A/701:705, 1/A/722:726 | Triple sheared | geometric IL_5J7L_263 IL_50730.2 | |
| IL_7M4Z_021 | 1/A/736:738, 1/A/755:756 | Major groove platform | homologous IL_5J7L_264 IL_48076.6 | |
| IL_7M4Z_022 | 1/A/740:742, 1/A/751:753 | Isolated non-canonical cWW pair | homologous IL_7A0S_020 IL_87907.2 | |
| IL_7M4Z_023 | 1/A/773:775, 1/A/785:789 | Multiple bulged bases | geometric IL_5TBW_033 NA | |
| IL_7M4Z_024 | 1/A/841:845, 1/A/930:932 | No text annotation | ||
| IL_7M4Z_178 | 1/A/841:846, 1/A/928:932 | No text annotation | ||
| IL_7M4Z_025 | 1/A/845:846, 1/A/928:930 | No text annotation | ||
| IL_7M4Z_026 | 1/A/848:849, 1/A/924:926 | Single stack bend | homologous IL_5J7L_269 IL_26793.1 | |
| IL_7M4Z_027 | 1/A/854:860, 1/A/913:919 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5J7L_270 IL_29198.2 | |
| IL_7M4Z_179 | 1/A/854:861, 1/A/911:919 | No text annotation | ||
| IL_7M4Z_028 | 1/A/860:861, 1/A/911:913 | Minor groove platform | geometric IL_7A0S_028 IL_51454.2 | |
| IL_7M4Z_029 | 1/A/862:866, 1/A/907:910 | C-loop | homologous IL_4WF9_033 IL_26222.2 | |
| IL_7M4Z_030 | 1/A/868:870, 1/A/903:905 | Isolated cWS basepair | homologous IL_4WF9_034 NA | |
| IL_7M4Z_031 | 1/A/991:993, 1/A/1157:1158 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_7M4Z_032 | 1/A/995:999, 1/A/1151:1155 | UAA/GAN | homologous IL_4WF9_036 IL_38507.2 | |
| IL_7M4Z_033 | 1/A/1001:1008, 1/A/1148:1149 | SSU/LSU pseudoknot | homologous IL_5J7L_278 IL_41203.4 | |
| IL_7M4Z_034 | 1/A/1008:1010, 1/A/1147:1148 | Single bulged U | geometric IL_4WF9_038 IL_89505.4 | |
| IL_7M4Z_035 | 1/A/1015:1021, 1/A/1137:1142 | No text annotation | homologous IL_7RQB_039 NA | |
| IL_7M4Z_036 | 1/A/1021:1027, 1/A/1121:1137 | No text annotation | geometric IL_5J7L_281 IL_50715.3 | |
| IL_7M4Z_037 | 1/A/1028:1031, 1/A/1118:1120 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 IL_57744.1 | |
| IL_7M4Z_038 | 1/A/1035:1038, 1/A/1111:1114 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 IL_85033.2 | |
| IL_7M4Z_039 | 1/A/1040:1050, 1/A/1103:1109 | No text annotation | ||
| IL_7M4Z_040 | 1/A/1191:1193, 1/A/1242:1245 | Isolated cWS basepair | homologous IL_4WF9_044 IL_42997.3 | |
| IL_7M4Z_041 | 1/A/1197:1201, 1/A/1235:1238 | No text annotation | homologous IL_5J7L_287 IL_91920.1 | |
| IL_7M4Z_042 | 1/A/1203:1210, 1/A/1229:1233 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_7M4Z_043 | 1/A/1257:1264, 1/A/2007:2013 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 IL_04346.10 | |
| IL_7M4Z_044 | 1/A/1305:1308, 1/A/1601:1602 | Major groove platform; stack outside cWW | homologous IL_7A0S_046 IL_50694.7 | |
| IL_7M4Z_045 | 1/A/1314:1318, 1/A/1326:1328 | C-loop | homologous IL_5J7L_291 IL_63596.11 | |
| IL_7M4Z_046 | 1/A/1346:1350, 1/A/1371:1375 | UAA/GAN | homologous IL_5J7L_292 IL_89021.2 | |
| IL_7M4Z_047 | 1/A/1352:1356, 1/A/1365:1369 | tSH-tHW-tHS | homologous IL_5J7L_293 IL_17136.7 | |
| IL_7M4Z_180 | 1/A/1410:1411, 1/A/1580:1585 | No text annotation | homologous IL_5J7L_294 IL_87211.1 | |
| IL_7M4Z_049 | 1/A/1412:1416, 1/A/1575:1579 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
| IL_7M4Z_050 | 1/A/1427:1430, 1/A/1555:1559 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 IL_58112.2 | |
| IL_7M4Z_051 | 1/A/1432:1435, 1/A/1549:1553 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_7M4Z_052 | 1/A/1445:1446, 1/A/1454:1456 | Single bulged U | homologous IL_5J7L_298 IL_89505.4 | |
| IL_7M4Z_181 | 1/A/1469:1473, 1/A/1509:1513 | tSH-tHW-tHS | homologous IL_5J7L_300 IL_38862.4 | |
| IL_7M4Z_054 | 1/A/1476:1478, 1/A/1501:1506 | No text annotation | ||
| IL_7M4Z_055 | 1/A/1484:1486, 1/A/1494:1495 | Single bulged A | homologous IL_5J7L_302 IL_31462.5 | |
| IL_7M4Z_056 | 1/A/1522:1525, 1/A/1540:1544 | No text annotation | ||
| IL_7M4Z_057 | 1/A/1649:1654, 1/A/2000:2002 | No text annotation | homologous IL_5J7L_304 IL_12566.4 | |
| IL_7M4Z_058 | 1/A/1661:1663, 1/A/1991:1993 | Isolated tWW turn | homologous IL_4WF9_063 IL_67095.2 | |
| IL_7M4Z_059 | 1/A/1664:1667, 1/A/1989:1990 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA | |
| IL_7M4Z_182 | 1/A/1664:1672, 1/A/1986:1990 | No text annotation | homologous IL_4WF9_117 IL_22854.4 | |
| IL_7M4Z_060 | 1/A/1667:1672, 1/A/1986:1989 | Intercalated tWH | geometric IL_4WF9_065 IL_76758.2 | |
| IL_7M4Z_061 | 1/A/1684:1689, 1/A/1694:1700 | tSH-tSH-tHH-tHS | geometric IL_5J7L_308 IL_47346.2 | |
| IL_7M4Z_062 | 1/A/1716:1720, 1/A/1732:1736 | Triple sheared | homologous IL_5J7L_310 IL_50730.2 | |
| IL_7M4Z_063 | 1/A/1766:1767, 1/A/1976:1978 | Single bulged A | homologous IL_5J7L_312 IL_31462.5 | |
| IL_7M4Z_064 | 1/A/1794:1800, 1/A/1809:1817 | Kink-turn related | homologous IL_7A0S_065 IL_17069.5 | |
| IL_7M4Z_065 | 1/A/1833:1836, 1/A/1898:1899 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_95583.2 | |
| IL_7M4Z_066 | 1/A/1837:1838, 1/A/1894:1897 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.4 | |
| IL_7M4Z_067 | 1/A/1842:1845, 1/A/1889:1890 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 IL_68140.4 | |
| IL_7M4Z_183 | 1/A/1847:1856, 1/A/1878:1887 | No text annotation | homologous IL_5J7L_387 IL_61249.1 | |
| IL_7M4Z_068 | 1/A/1860:1863, 1/A/1870:1874 | UAA/GAN variation | homologous IL_5J7L_317 IL_77691.5 | |
| IL_7M4Z_069 | 1/A/1929:1930, 1/A/1960:1963 | Bulged stacked bases | homologous IL_7A0S_071 IL_22551.3 | |
| IL_7M4Z_070 | 1/A/1930:1941, 1/A/1957:1960 | No text annotation | geometric IL_4WF9_077 IL_42218.2 | |
| IL_7M4Z_071 | 1/A/2045:2048, 1/A/2613:2615 | No text annotation | geometric IL_6DME_003 IL_55516.2 | |
| IL_7M4Z_072 | 1/A/2050:2052, 1/A/2608:2611 | No text annotation | homologous IL_5J7L_321 IL_83389.2 | |
| IL_7M4Z_184 | 1/A/2063:2065, 1/A/2438:2439 | Single bulged U | homologous IL_4WF9_080 IL_89505.4 | |
| IL_7M4Z_075 | 1/A/2066:2067, 1/A/2434:2437 | Minor groove platform | geometric IL_5TBW_094 NA | |
| IL_7M4Z_076 | 1/A/2077:2079, 1/A/2232:2235 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_7M4Z_077 | 1/A/2081:2083, 1/A/2228:2230 | Isolated non-canonical cWW pair | homologous IL_7A0S_078 IL_28037.2 | |
| IL_7M4Z_078 | 1/A/2198:2200, 1/A/2216:2217 | Single bulged U | homologous IL_5J7L_331 IL_89505.4 | |
| IL_7M4Z_185 | 1/A/2293:2295, 1/A/2313:2317 | No text annotation | ||
| IL_7M4Z_080 | 1/A/2346:2349, 1/A/2360:2363 | Double sheared | homologous IL_5J7L_333 IL_09705.15 | |
| IL_7M4Z_081 | 1/A/2397:2399, 1/A/2410:2411 | Single bulged U | homologous IL_5J7L_334 IL_89505.4 | |
| IL_7M4Z_082 | 1/A/2449:2450, 1/A/2494:2496 | Single stack bend | geometric IL_4WF9_089 IL_26793.1 | |
| IL_7M4Z_083 | 1/A/2450:2451, 1/A/2492:2494 | Major groove platform | homologous IL_4WF9_090 IL_48076.6 | |
| IL_7M4Z_186 | 1/A/2453:2455, 1/A/2489:2490 | Major groove platform | homologous IL_5J7L_393 IL_07039.3 | |
| IL_7M4Z_085 | 1/A/2455:2457, 1/A/2485:2489 | Major groove minor groove platform with extra cWW | homologous IL_7A0S_086 IL_51387.2 | |
| IL_7M4Z_086 | 1/A/2462:2466, 1/A/2476:2480 | Triple sheared | homologous IL_5J7L_338 IL_17948.2 | |
| IL_7M4Z_187 | 1/A/2503:2504, 1/A/2576:2578 | Major groove platform | homologous IL_5J7L_394 IL_07039.3 | |
| IL_7M4Z_088 | 1/A/2506:2508, 1/A/2570:2574 | Isolated non-canonical cWW with bulges | homologous IL_5J7L_340 IL_07785.1 | |
| IL_7M4Z_089 | 1/A/2508:2509, 1/A/2567:2570 | No text annotation | geometric IL_5J7L_341 IL_42626.2 | |
| IL_7M4Z_090 | 1/A/2518:2519, 1/A/2536:2539 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
| IL_7M4Z_092 | 1/A/2587:2588, 1/A/2597:2599 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_7M4Z_093 | 1/A/2632:2636, 1/A/2770:2778 | tSH-tHS-tHW | homologous IL_4WF9_099 IL_04638.3 | |
| IL_7M4Z_094 | 1/A/2647:2654, 1/A/2659:2665 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_7M4Z_095 | 1/A/2676:2680, 1/A/2721:2723 | C-loop | homologous IL_5J7L_347 IL_63596.11 | |
| IL_7M4Z_096 | 1/A/2683:2687, 1/A/2714:2718 | No text annotation | homologous IL_4WF9_102 IL_23774.1 | |
| IL_7M4Z_097 | 1/A/2691:2692, 1/A/2707:2710 | Multiple bulged bases | homologous IL_5J7L_349 IL_42626.2 | |
| IL_7M4Z_098 | 1/A/2733:2738, 1/A/2758:2763 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_7M4Z_099 | 1/A/2791:2792, 1/A/2795:2797 | Single bulged U | geometric IL_5J7L_279 IL_89505.4 | |
| IL_7M4Z_100 | 1/A/2802:2807, 1/A/2885:2888 | No text annotation | homologous IL_5J7L_351 IL_29471.1 | |
| IL_7M4Z_101 | 1/A/2834:2835, 1/A/2874:2876 | Major groove intercalation | homologous IL_5J7L_352 IL_66635.5 | |
| IL_7M4Z_102 | 1/A/2839:2842, 1/A/2866:2870 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 IL_64231.5 | |
| IL_7M4Z_103 | 1/A/2843:2848, 1/A/2861:2865 | tHS double platform | homologous IL_5J7L_354 IL_70411.2 | |
| IL_7M4Z_104 | 1/B/15:16, 1/B/63:65 | Major groove intercalation | homologous IL_4WF9_112 IL_31462.5 | |
| IL_7M4Z_105 | 1/B/20:26, 1/B/54:59 | No text annotation | ||
| IL_7M4Z_192 | 1/B/28:29, 1/B/49:52 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 IL_68140.4 | |
| IL_7M4Z_193 | 1/B/32:36, 1/B/42:46 | No text annotation | homologous IL_9DFE_113 IL_58103.11 | |
| IL_7M4Z_108 | 1/B/69:77, 1/B/94:102 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_7M4Z_109 | 1/a/32:34, 1/a/549:550 | Single bulged G | homologous IL_5J7L_001 IL_00225.13 | |
| IL_7M4Z_110 | 1/a/46:47, 1/a/392:394 | Single bulged A | homologous IL_5J7L_002 IL_31462.5 | |
| IL_7M4Z_111 | 1/a/49:54, 1/a/355:357 | No text annotation | homologous IL_5J7L_003 IL_14177.2 | |
| IL_7M4Z_112 | 1/a/56:58, 1/a/352:353 | Minor groove platform | homologous IL_4LFB_004 IL_51454.2 | |
| IL_7M4Z_113 | 1/a/65:68, 1/a/99:100 | Multiple bulged bases | homologous IL_5J7L_005 IL_82107.4 | |
| IL_7M4Z_114 | 1/a/69:71, 1/a/96:98 | Isolated non-canonical cWW pair | homologous IL_6CZR_118 NA | |
| IL_7M4Z_115 | 1/a/73:77, 1/a/90:94 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_7M4Z_116 | 1/a/124:127, 1/a/227:229 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 IL_57744.1 | |
| IL_7M4Z_117 | 1/a/128:132, 1/a/223:226 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_7M4Z_118 | 1/a/140:142, 1/a/172:174 | Isolated cWH basepair | homologous IL_5J7L_011 IL_10167.5 | |
| IL_7M4Z_119 | 1/a/143:149, 1/a/164:171 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 IL_80604.6 | |
| IL_7M4Z_194 | 1/a/199:202, 1/a/209:210 | Minor groove platform | geometric IL_3MXH_005 IL_15052.4 | |
| IL_7M4Z_121 | 1/a/238:243, 1/a/273:280 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_7M4Z_122 | 1/a/245:248, 1/a/270:271 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_7M4Z_123 | 1/a/288:289, 1/a/300:304 | C-loop | homologous IL_5J7L_016 IL_03109.3 | |
| IL_7M4Z_124 | 1/a/363:365, 1/a/388:389 | Single bulged U | homologous IL_5J7L_017 IL_89505.4 | |
| IL_7M4Z_125 | 1/a/367:371, 1/a/385:386 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_7M4Z_126 | 1/a/371:372, 1/a/383:385 | Single bulged G | homologous IL_5J7L_019 IL_00225.13 | |
| IL_7M4Z_127 | 1/a/405:412, 1/a/423:429 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_7M4Z_128 | 1/a/436:438, 1/a/489:494 | No text annotation | homologous IL_5J7L_021 IL_33323.1 | |
| IL_7M4Z_129 | 1/a/442:446, 1/a/480:485 | tSH-tHW-tWW | homologous IL_5J7L_022 IL_88269.4 | |
| IL_7M4Z_130 | 1/a/446:449, 1/a/476:480 | No text annotation | ||
| IL_7M4Z_131 | 1/a/452:453, 1/a/471:473 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_7M4Z_132 | 1/a/501:508, 1/a/537:538 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_41203.4 | |
| IL_7M4Z_133 | 1/a/512:518, 1/a/525:533 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_7M4Z_134 | 1/a/566:572, 1/a/877:878 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
| IL_7M4Z_135 | 1/a/577:581, 1/a/754:758 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_17136.7 | |
| IL_7M4Z_136 | 1/a/591:593, 1/a/641:642 | Major groove platform | homologous IL_5J7L_028 IL_48076.6 | |
| IL_7M4Z_137 | 1/a/594:595, 1/a/637:640 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
| IL_7M4Z_138 | 1/a/602:609, 1/a/625:630 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
| IL_7M4Z_139 | 1/a/651:652, 1/a/748:751 | Major groove platform; stack outside cWW | geometric IL_4LFB_027 IL_50694.7 | |
| IL_7M4Z_140 | 1/a/656:657, 1/a/742:744 | Single stack bend | homologous IL_5J7L_032 IL_26793.1 | |
| IL_7M4Z_141 | 1/a/659:663, 1/a/737:740 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 IL_85033.2 | |
| IL_7M4Z_189 | 1/a/670:674, 1/a/710:714 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_49751.4 | |
| IL_7M4Z_190 | 1/a/681:685, 1/a/696:703 | Kink-turn | homologous IL_5J7L_035 IL_01488.3 | |
| IL_7M4Z_144 | 1/a/771:775, 1/a/801:802 | Left turn | homologous IL_5J7L_036 IL_29346.2 | |
| IL_7M4Z_145 | 1/a/776:780, 1/a/796:800 | tSH-tHW-tHS | homologous IL_5J7L_037 IL_17136.7 | |
| IL_7M4Z_146 | 1/a/884:891, 1/a/902:907 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
| IL_7M4Z_147 | 1/a/919:920, 1/a/1390:1392 | Single bulged A | homologous IL_5J7L_039 IL_31462.5 | |
| IL_7M4Z_148 | 1/a/922:924, 1/a/1387:1388 | Single bulged G | homologous IL_4LFB_036 IL_00225.13 | |
| IL_7M4Z_149 | 1/a/930:932, 1/a/1377:1381 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_7M4Z_150 | 1/a/950:951, 1/a/1223:1225 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_7M4Z_151 | 1/a/990:994, 1/a/1041:1042 | Minor groove platform | homologous IL_4LFB_039 IL_47078.3 | |
| IL_7M4Z_195 | 1/a/995:996, 1/a/1038:1040 | Single stack bend | homologous IL_5J7L_044 IL_26793.1 | |
| IL_7M4Z_153 | 1/a/1003:1006, 1/a/1017:1020 | Tandem non-canonical cWW pairs | geometric IL_6MWN_005 IL_77658.1 | |
| IL_7M4Z_154 | 1/a/1045:1047, 1/a/1205:1206 | Single bulged U | geometric IL_5J7L_046 IL_89505.4 | |
| IL_7M4Z_191 | 1/a/1049:1053, 1/a/1201:1203 | No text annotation | homologous IL_6CZR_154 NA | |
| IL_7M4Z_156 | 1/a/1054:1055, 1/a/1196:1200 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_7M4Z_157 | 1/a/1057:1058, 1/a/1192:1194 | Single bulged A | geometric IL_5J7L_049 IL_31462.5 | |
| IL_7M4Z_158 | 1/a/1058:1060, 1/a/1190:1192 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 IL_28037.2 | |
| IL_7M4Z_159 | 1/a/1120:1125, 1/a/1141:1147 | No text annotation | ||
| IL_7M4Z_160 | 1/a/1126:1129, 1/a/1139:1140 | Minor groove platform | homologous IL_5J7L_052 IL_15052.4 | |
| IL_7M4Z_161 | 1/a/1155:1158, 1/a/1172:1178 | No text annotation | geometric IL_5J7L_053 IL_42032.1 | |
| IL_7M4Z_162 | 1/a/1244:1250, 1/a/1281:1287 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
| IL_7M4Z_163 | 1/a/1252:1255, 1/a/1274:1279 | 180 degree turn | homologous IL_5J7L_055 IL_11344.2 | |
| IL_7M4Z_164 | 1/a/1256:1259, 1/a/1270:1273 | Tandem non-canonical cWW pairs | geometric IL_4V88_461 NA | |
| IL_7M4Z_165 | 1/a/1300:1305, 1/a/1326:1331 | No text annotation | homologous IL_4LFB_055 IL_85536.2 | |
| IL_7M4Z_166 | 1/a/1396:1398, 1/a/1498:1501 | No text annotation | homologous IL_6CZR_165 NA | |
| IL_7M4Z_167 | 1/a/1398:1401, 1/a/1494:1498 | No text annotation | geometric IL_4V88_464 NA | |
| IL_7M4Z_168 | 1/a/1402:1404, 1/a/1491:1493 | Isolated non-canonical cWW pair | geometric IL_5MWI_007 NA | |
| IL_7M4Z_169 | 1/a/1404:1406, 1/a/1488:1491 | No text annotation | geometric IL_6DME_003 IL_55516.2 | |
| IL_7M4Z_170 | 1/a/1409:1411, 1/a/1483:1485 | Isolated non-canonical cWW pair | homologous IL_4LFB_059 IL_87907.2 | |
| IL_7M4Z_171 | 1/a/1413:1416, 1/a/1478:1481 | Double sheared | homologous IL_6CZR_169 NA | |
| IL_7M4Z_172 | 1/a/1418:1420, 1/a/1474:1476 | Isolated non-canonical cWW pair | geometric IL_3SZX_001 IL_87907.2 | |
| IL_7M4Z_173 | 1/a/1427:1432, 1/a/1463:1467 | Triple sheared related | homologous IL_5J7L_063 IL_80231.1 | |
| IL_7M4Z_174 | 1/a/1437:1439, 1/a/1457:1458 | Single bulged A | homologous IL_5J7L_064 IL_31462.5 | |
| IL_7M4Z_175 | 1/a/1442:1445, 1/a/1452:1454 | No text annotation | homologous IL_5J7L_065 IL_31531.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7M4Z_177 | Isolated non-canonical cWW pair | ||
| IL_7M4Z_048 | No text annotation | ||
| IL_7M4Z_053 | No text annotation | ||
| IL_7M4Z_073 | Isolated non-canonical cWW pair | ||
| IL_7M4Z_074 | Tandem non-canonical cWW pairs | ||
| IL_7M4Z_079 | No text annotation | ||
| IL_7M4Z_084 | Major groove platform with extra pair | ||
| IL_7M4Z_087 | No text annotation | ||
| IL_7M4Z_091 | No text annotation | ||
| IL_7M4Z_106 | No text annotation | ||
| IL_7M4Z_107 | No text annotation | ||
| IL_7M4Z_120 | No text annotation | ||
| IL_7M4Z_188 | No text annotation | ||
| IL_7M4Z_142 | No text annotation | ||
| IL_7M4Z_143 | Kink-turn | ||
| IL_7M4Z_152 | Other IL | ||
| IL_7M4Z_155 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7M4Z_001 | 1/A/37:38, 1/A/473:480, 1/A/508:509 | No text annotation | homologous J3_5J7L_036 J3_60031.2 | |
| J3_7M4Z_026 | 1/A/37:38, 1/A/473:483, 1/A/495:509 | No text annotation | homologous J3_4WF9_011 J3_92134.2 | |
| J3_7M4Z_027 | 1/A/39:42, 1/A/444:460, 1/A/467:472 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
| J3_7M4Z_002 | 1/A/63:64, 1/A/77:83, 1/A/117:121 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
| J3_7M4Z_003 | 1/A/681:687, 1/A/771:773, 1/A/789:792 | No text annotation | homologous J3_5J7L_038 J3_64189.2 | |
| J3_7M4Z_004 | 1/A/696:698, 1/A/730:734, 1/A/758:761 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_7M4Z_005 | 1/A/1293:1298, 1/A/1623:1625, 1/A/1637:1640 | No text annotation | homologous J3_5J7L_041 J3_32852.6 | |
| J3_7M4Z_006 | 1/A/1301:1304, 1/A/1603:1609, 1/A/1618:1620 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_7M4Z_007 | 1/A/1339:1344, 1/A/1377:1380, 1/A/1397:1398 | No text annotation | homologous J3_5J7L_043 J3_92705.1 | |
| J3_7M4Z_028 | 1/A/1419:1424, 1/A/1562:1563, 1/A/1566:1572 | No text annotation | homologous J3_7A0S_019 J3_34864.2 | |
| J3_7M4Z_008 | 1/A/2087:2089, 1/A/2192:2196, 1/A/2219:2224 | Kink-turn in J3 | homologous J3_5J7L_044 J3_89368.5 | |
| J3_7M4Z_029 | 1/A/2278:2280, 1/A/2380:2391, 1/A/2417:2423 | No text annotation | homologous J3_5J7L_070 J3_20992.1 | |
| J3_7M4Z_009 | 1/A/2291:2293, 1/A/2317:2319, 1/A/2328:2333 | No text annotation | homologous J3_5J7L_045 J3_61124.2 | |
| J3_7M4Z_030 | 1/A/2291:2295, 1/A/2313:2319, 1/A/2328:2333 | No text annotation | ||
| J3_7M4Z_010 | 1/A/2513:2516, 1/A/2541:2543, 1/A/2557:2563 | No text annotation | homologous J3_5J7L_046 J3_32601.5 | |
| J3_7M4Z_031 | 1/A/2785:2787, 1/A/2801:2802, 1/A/2888:2890 | No text annotation | homologous J3_5J7L_047 J3_30104.1 | |
| J3_7M4Z_012 | 1/A/2810:2811, 1/A/2827:2832, 1/A/2878:2882 | No text annotation | ||
| J3_7M4Z_013 | 1/B/8:14, 1/B/66:67, 1/B/104:107 | No text annotation | geometric J3_7A0S_021 J3_47324.1 | |
| J3_7M4Z_014 | 1/a/48:49, 1/a/357:363, 1/a/389:391 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
| J3_7M4Z_033 | 1/a/48:54, 1/a/355:363, 1/a/389:391 | No text annotation | homologous J3_5J7L_050 J3_46317.4 | |
| J3_7M4Z_015 | 1/a/583:585, 1/a/648:651, 1/a/751:752 | No text annotation | homologous J3_5J7L_002 J3_56052.5 | |
| J3_7M4Z_034 | 1/a/583:585, 1/a/648:652, 1/a/748:752 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_7M4Z_016 | 1/a/669:670, 1/a/714:722, 1/a/729:731 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
| J3_7M4Z_017 | 1/a/823:826, 1/a/854:858, 1/a/865:871 | No text annotation | homologous J3_5J7L_004 J3_85054.4 | |
| J3_7M4Z_035 | 1/a/933:936, 1/a/1341:1347, 1/a/1369:1376 | No text annotation | homologous J3_5J7L_052 J3_25303.4 | |
| J3_7M4Z_018 | 1/a/940:943, 1/a/1232:1234, 1/a/1334:1337 | No text annotation | homologous J3_4LFB_003 J3_52655.4 | |
| J3_7M4Z_019 | 1/a/952:959, 1/a/970:981, 1/a/1218:1222 | No text annotation | homologous J3_5J7L_006 J3_83516.4 | |
| J3_7M4Z_020 | 1/a/987:990, 1/a/1042:1044, 1/a/1207:1212 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
| J3_7M4Z_036 | 1/a/987:994, 1/a/1041:1044, 1/a/1207:1212 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
| J3_7M4Z_021 | 1/a/999:1003, 1/a/1020:1024, 1/a/1031:1035 | No text annotation | ||
| J3_7M4Z_022 | 1/a/1060:1065, 1/a/1104:1110, 1/a/1184:1190 | No text annotation | homologous J3_5J7L_008 J3_08394.3 | |
| J3_7M4Z_037 | 1/a/1070:1071, 1/a/1080:1083, 1/a/1096:1099 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_7M4Z_024 | 1/a/1113:1115, 1/a/1152:1155, 1/a/1178:1181 | No text annotation | homologous J3_5J7L_010 J3_82365.4 | |
| J3_7M4Z_038 | 1/a/1113:1115, 1/a/1152:1158, 1/a/1172:1181 | No text annotation | homologous J3_4LFB_018 J3_17791.2 | |
| J3_7M4Z_025 | 1/a/1234:1238, 1/a/1293:1300, 1/a/1331:1334 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J4_7M4Z_001 | 1/A/275:276, 1/A/369:374, 1/A/398:405, 1/A/420:423 | No text annotation | homologous J4_5J7L_018 J4_45801.6 | |
| J4_7M4Z_002 | 1/A/299:303, 1/A/318:321, 1/A/325:327, 1/A/339:343 | No text annotation | homologous J4_5J7L_019 J4_71729.5 | |
| J4_7M4Z_003 | 1/A/599:602, 1/A/622:626, 1/A/633:636, 1/A/648:654 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_7M4Z_004 | 1/A/1265:1271, 1/A/1289:1290, 1/A/1643:1646, 1/A/2005:2006 | No text annotation | homologous J4_5J7L_021 J4_64571.5 | |
| J4_7M4Z_005 | 1/A/1305:1309, 1/A/1333:1338, 1/A/1399:1400, 1/A/1595:1602 | No text annotation | homologous J4_5J7L_022 J4_69051.6 | |
| J4_7M4Z_006 | 1/A/1308:1309, 1/A/1333:1338, 1/A/1399:1400, 1/A/1595:1601 | No text annotation | homologous J4_5J7L_023 J4_10313.5 | |
| J4_7M4Z_007 | 1/A/1439:1440, 1/A/1461:1466, 1/A/1516:1525, 1/A/1540:1545 | No text annotation | ||
| J4_7M4Z_008 | 1/A/1768:1772, 1/A/1784:1788, 1/A/1823:1826, 1/A/1971:1975 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_7M4Z_009 | 1/A/1829:1831, 1/A/1901:1902, 1/A/1920:1929, 1/A/1963:1968 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_7M4Z_015 | 1/A/2281:2285, 1/A/2339:2343, 1/A/2366:2368, 1/A/2377:2379 | No text annotation | homologous J4_5J7L_027 J4_04930.6 | |
| J4_7M4Z_011 | 1/A/2639:2642, 1/A/2670:2672, 1/A/2727:2731, 1/A/2765:2767 | No text annotation | ||
| J4_7M4Z_012 | 1/a/111:118, 1/a/235:236, 1/a/282:285, 1/a/307:308 | No text annotation | homologous J4_5J7L_001 J4_35578.3 | |
| J4_7M4Z_013 | 1/a/139:140, 1/a/174:180, 1/a/189:194, 1/a/215:216 | No text annotation | ||
| J4_7M4Z_014 | 1/a/572:574, 1/a/761:766, 1/a/807:818, 1/a/876:877 | No text annotation | homologous J4_5J7L_003 J4_61885.6 | |
| J5_7M4Z_001 | 1/A/54:61, 1/A/123:128, 1/A/137:138, 1/A/155:157, 1/A/183:185 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
| J5_7M4Z_002 | 1/A/530:532, 1/A/558:562, 1/A/575:577, 1/A/1256:1257, 1/A/2013:2014 | No text annotation | homologous J5_5J7L_014 J5_43153.5 | |
| J5_7M4Z_003 | 1/A/582:587, 1/A/666:669, 1/A/807:810, 1/A/1190:1191, 1/A/1245:1251 | No text annotation | homologous J5_5J7L_015 J5_74302.5 | |
| J5_7M4Z_004 | 1/A/1672:1680, 1/A/1704:1705, 1/A/1747:1748, 1/A/1752:1760, 1/A/1984:1986 | No text annotation | homologous J5_5J7L_016 J5_62523.6 | |
| J5_7M4Z_005 | 1/A/2053:2060, 1/A/2442:2449, 1/A/2496:2502, 1/A/2579:2584, 1/A/2602:2607 | No text annotation | ||
| J5_7M4Z_006 | 1/A/2070:2073, 1/A/2239:2242, 1/A/2254:2255, 1/A/2277:2278, 1/A/2423:2431 | No text annotation | homologous J5_7A0S_007 J5_39529.1 | |
| J5_7M4Z_007 | 1/a/38:41, 1/a/399:402, 1/a/432:436, 1/a/494:497, 1/a/542:545 | No text annotation | homologous J5_5J7L_001 J5_92941.1 | |
| J5_7M4Z_008 | 1/a/38:41, 1/a/399:402, 1/a/432:438, 1/a/489:497, 1/a/542:545 | No text annotation | homologous J5_5J7L_002 J5_67416.1 | |
| J5_7M4Z_009 | 1/a/60:63, 1/a/102:109, 1/a/310:312, 1/a/333:335, 1/a/346:350 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
| J6_7M4Z_001 | 1/A/52:53, 1/A/186:190, 1/A/221:231, 1/A/238:242, 1/A/269:273, 1/A/425:432 | No text annotation | ||
| J6_7M4Z_002 | 1/A/2070:2073, 1/A/2239:2242, 1/A/2254:2255, 1/A/2277:2280, 1/A/2380:2391, 1/A/2417:2431 | No text annotation | ||
| J7_7M4Z_001 | 1/A/15:22, 1/A/524:530, 1/A/2014:2019, 1/A/2036:2039, 1/A/2621:2626, 1/A/2784:2785, 1/A/2890:2891 | No text annotation | ||
| J7_7M4Z_002 | 1/A/815:820, 1/A/833:836, 1/A/937:943, 1/A/968:973, 1/A/984:988, 1/A/1161:1162, 1/A/1180:1185 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7M4Z_011 | No text annotation | ||
| J3_7M4Z_032 | No text annotation | ||
| J3_7M4Z_023 | No text annotation | ||
| J4_7M4Z_010 | No text annotation |
Coloring options: