HL_7M4Z_026

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

G(PSU)GCUAACGU

Length

10 nucleotides

Bulged bases

7M4Z|1|A|U|955, 7M4Z|1|A|C|958

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7M4Z_026 not in the Motif Atlas

Homologous match to HL_5J7L_159

Geometric discrepancy: 0.1089

The information below is about HL_5J7L_159

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7M4Z|1|A|G|951
7M4Z|1|A|PSU|952
7M4Z|1|A|G|953
7M4Z|1|A|C|954
7M4Z|1|A|U|955
7M4Z|1|A|A|956
7M4Z|1|A|A|957
7M4Z|1|A|C|958
7M4Z|1|A|G|959
7M4Z|1|A|U|960

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L16