HL_7M4Z_048

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

GUG(6MZ)AGAUGC

Length

10 nucleotides

Bulged bases

7M4Z|1|A|A|2027, 7M4Z|1|A|G|2028

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7M4Z_048 not in the Motif Atlas

Homologous match to HL_5J7L_183

Geometric discrepancy: 0.1185

The information below is about HL_5J7L_183

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

7M4Z|1|A|G|2023
7M4Z|1|A|U|2024
7M4Z|1|A|G|2025
7M4Z|1|A|6MZ|2026
7M4Z|1|A|A|2027
7M4Z|1|A|G|2028
7M4Z|1|A|A|2029
7M4Z|1|A|U|2030
7M4Z|1|A|G|2031
7M4Z|1|A|C|2032

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain Q

50S ribosomal protein L21

Chain Z

50S ribosomal protein L32