HL_7M5D_048
3D structure
- PDB id
- 7M5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- G(PSU)AAC(3TD)A(PSU)AAC
- Length
- 11 nucleotides
- Bulged bases
- 7M5D|1|1|A|1913, 7M5D|1|1|C|1914, 7M5D|1|1|A|1916
- QA status
- Modified nucleotides: PSU, 3TD
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7M5D_048 not in the Motif Atlas
- Homologous match to HL_9DFE_046
- Geometric discrepancy: 0.4077
- The information below is about HL_9DFE_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_82185.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7M5D|1|1|G|1910
7M5D|1|1|PSU|1911
7M5D|1|1|A|1912
7M5D|1|1|A|1913
7M5D|1|1|C|1914
7M5D|1|1|3TD|1915
7M5D|1|1|A|1916
7M5D|1|1|PSU|1917
7M5D|1|1|A|1918
7M5D|1|1|A|1919
7M5D|1|1|C|1920
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 5
- Transfer RNA; tRNA
- Chain A
- Peptide chain release factor 1
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